CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Solyc05g054650.1
(
Solanum lycopersicum
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
Solyc05g054650.1
T129367_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AT5G03510
M00860_2.00
Arabidopsis thaliana
NNHRSWN
NWSYDNN
PBM
Franco-Zorrilla et al.(2014)
ZAT14
0.800
0.783
AT5G04390
M01857_2.00
Arabidopsis thaliana
NNHRSWN
NWSYDNN
PBM
Weirauch et al.(2014)
pTH7158
0.795
0.804
AT5G04390
M06819_2.00
Arabidopsis thaliana
HHHHWHCACTN
NAGTGDWDDDD
Dap-seq
OMalley et al.(2016)
At5g04390_col200_a
0.795
0.804
AT3G53600
M01856_2.00
Arabidopsis thaliana
NNHASWN
NWSTDNN
PBM
Weirauch et al.(2014)
pTH7188
0.786
0.783
AT3G53600
M00858_2.00
Arabidopsis thaliana
NNNNRSWN
NWSYNNNN
PBM
Franco-Zorrilla et al.(2014)
ZAT18
0.786
0.783
ZAT1
M01167_2.00
Arabidopsis thaliana
NHRCTNN
NNAGYDN
PBM
Lambert et al.(2019)
pTH10246
0.774
0.696
ZAT7
M01855_2.00
Arabidopsis thaliana
NVDBRCACTNNNN
NNNNAGTGYVHBN
PBM
Weirauch et al.(2014)
pTH7540
0.771
0.804
AT3G46070
M06813_2.00
Arabidopsis thaliana
HYHHYHTCACTYHHH
DDDRAGTGADRDDRD
Dap-seq
OMalley et al.(2016)
AT3G46070_col_a
0.763
0.826
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Solyc05g054650.1.1
C2H2 ZF
27
49
FECKTCNRQFSSFQALGGHRASH
Solyc05g054650.1.1
C2H2 ZF
72
94
HECSICGLEFPIGQALGGHMRRH
Links
Other
C2H2 ZF
family TFs
Other
Solanum lycopersicum
TFs
391 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
A1O1_00464
Capronia coronata
A1O1_00464
N
0.000
A1O1_02535
Capronia coronata
A1O1_02535
N
0.000
CADAFLAG00003334
Aspergillus flavus
CADAFLAG00003334
N
0.000
ANIA_01584
Aspergillus nidulans
CADANIAG00008217
N
0.000
ATEG_06092
Aspergillus terreus
CADATEAG00000839
N
0.000
CFIO01_01654
Colletotrichum fioriniae
CFIO01_01654
N
0.000
CIMG_02802
Coccidioides immitis
CIMG_02802
N
0.000
CPC735_036320
Coccidioides posadasii
CPC735_036320
N
0.000
EURHEDRAFT_415639
Aspergillus ruber
EURHEDRAFT_415639
N
0.000
F503_03308
Ophiostoma piceae uamh
F503_03308
N
0.000
FFUJ_11117
Fusarium fujikuroi
FFUJ_11117
N
0.000
fgenesh1_pg.sca_28_chr13_5_0000057
Nectria haematococca
fgenesh1_pg.sca_28_chr13_5_0000057
N
0.000
fgenesh1_pg.sca_32_chr11_3_0000153
Nectria haematococca
fgenesh1_pg.sca_32_chr11_3_0000153
N
0.000
FGRRES_03102
Fusarium graminearum
FGRRES_03102
N
0.000
FPSE_02123
Fusarium pseudograminearum
FPSE_02123
N
0.000
HMPREF1120_04953
Exophiala dermatitidis
HMPREF1120_04953
N
0.000
HMPREF1120_05596
Exophiala dermatitidis
HMPREF1120_05596
I
0.000
HMPREF1624_03990
Sporothrix schenckii
HMPREF1624_03990
N
0.000
KUCA_T00000009001
Kuraishia capsulata
KUCA_T00000009001
N
0.000
KUCA_T00000013001
Kuraishia capsulata
KUCA_T00000013001
N
0.000
KUCA_T00003117001
Kuraishia capsulata
KUCA_T00003117001
N
0.000
KUCA_T00003996001
Kuraishia capsulata
KUCA_T00003996001
N
0.000
KUCA_T00004747001
Kuraishia capsulata
KUCA_T00004747001
N
0.000
KUCA_T00005495001
Kuraishia capsulata
KUCA_T00005495001
N
0.000
MAC_06969
Metarhizium acridum
MAC_06969
N
0.000
MAJ_08159
Metarhizium majus
MAJ_08159
N
0.000
MBR_08966
Metarhizium brunneum
MBR_08966
N
0.000
MGG_14816
Magnaporthe oryzae
MGG_14816
N
0.000
MGU_09044
Metarhizium guizhouense
MGU_09044
N
0.000
NechaG86758
Fusarium solani
NechaG86758
N
0.000
NechaG88155
Fusarium solani
NechaG88155
N
0.000
Pc13g03330
Penicillium chrysogenum
Pc13g03330
N
0.000
PCH_Pc13g03330
Penicillium rubens
PCH_Pc13g03330
N
0.000
PDE_06660
Penicillium oxalicum
PDE_06660
N
0.000
PEX1_062920
Penicillium expansum
PEX1_062920
N
0.000
PFICI_00049
Pestalotiopsis fici
PFICI_00049
N
0.000
PV04_07764
Capronia semiimmersa
PV04_07764
N
0.000
PV06_11257
Exophiala oligosperma
PV06_11257
N
0.000
PV06_11661
Exophiala oligosperma
PV06_11661
N
0.000
PV06_11680
Exophiala oligosperma
PV06_11680
N
0.000
U727_00432581551
Penicillium solitum
U727_00432581551
N
0.000
VDBG_09586
Verticillium alfalfae
VDBG_09586
N
0.000
VDBG_09586
Verticillium albo atrum
VDBG_09586
N
0.000
VHEMI00089
Torrubiella hemipterigena
VHEMI00089
N
0.000