Alligator_sinensis_CCG001391.4 (Alligator sinensis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Alligator_sinensis_CCG001391.4 T132974_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Maz
M08988_2.00 		Mus musculus
YYBYYYYYYCNSYYCCWCCYYN
NRRGGWGGRRSNGRRRRRRVRR		 Misc
Kulakovskiy et al.(2013)
MAZ_MOUSE.H11MO.0.A 		0.782 0.964
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG001391.4 C2H2 ZF 1 19
Alligator_sinensis_CCG001391.4 C2H2 ZF 25 47
Alligator_sinensis_CCG001391.4 C2H2 ZF 55 78
Alligator_sinensis_CCG001391.4 C2H2 ZF 84 106
Alligator_sinensis_CCG001391.4 C2H2 ZF 110 131

Links

Other C2H2 ZF family TFs
Other Alligator sinensis TFs

24 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000000662 Ailuropoda melanoleuca ENSAMEG00000000662 I
MYPOP Bos taurus ENSBTAG00000045708 I
MYPOP Canis familiaris ENSCAFG00000023848 I
MYPOP Callithrix jacchus ENSCJAG00000036087 I
MYPOP Cavia porcellus ENSCPOG00000012168 I
ENSCSAG00000003108 Chlorocebus sabaeus ENSCSAG00000003108 I
MYPOP Homo sapiens ENSG00000176182 I
MYPOP Gorilla gorilla ENSGGOG00000017080 I
ENSLACG00000014521 Latimeria chalumnae ENSLACG00000014521 I
FBXO46 Loxodonta africana ENSLAFG00000027244 I
ENSMICG00000001899 Microcebus murinus ENSMICG00000001899 I
ENSMMUG00000028745 Macaca mulatta ENSMMUG00000028745 I
MYPOP Monodelphis domestica ENSMODG00000021531 I
ENSMPUG00000005494 Mustela putorius furo ENSMPUG00000005494 I
Mypop Mus musculus ENSMUSG00000048481 D
ENSNLEG00000002401 Nomascus leucogenys ENSNLEG00000002401 I
ENSOARG00000010393 Ovis aries ENSOARG00000010393 I
MYPOP Oryctolagus cuniculus ENSOCUG00000029475 I
ENSP00000325402-D1 Bos grunniens ENSP00000325402-D1 I
ENSPANG00000002240 Papio anubis ENSPANG00000002240 I
MYPOP Procavia capensis ENSPCAG00000005499 I
MYPOP Pan troglodytes ENSPTRG00000028972 I
Mypop Rattus norvegicus ENSRNOG00000014132 I
ENSSHAG00000002071 Sarcophilus harrisii ENSSHAG00000002071 I
ENSSSCG00000003097 Sus scrofa ENSSSCG00000003097 I
ENSSTOG00000001557 Ictidomys tridecemlineatus ENSSTOG00000001557 I
MYPOP Tursiops truncatus ENSTTRG00000014314 I
Pvit_16908 Pogona vitticeps Pvit_16908 I