Alligator_sinensis_CCG005389.1 (Alligator sinensis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Alligator_sinensis_CCG005389.1 T133132_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Sp7
M09009_2.00 		Mus musculus
VHAVCCTRTAATTW
WAATTAYAGGBTDB		 Misc
Kulakovskiy et al.(2013)
SP7_MOUSE.H11MO.0.A 		0.821 0.971
SP7
M10258_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$OSX_Q3 		0.821 0.971
SP8
M02898_2.00 		Homo sapiens
VMCACBCCCMCH
DGKGGGVGTGKB		 SELEX
Jolma et al.(2013)
SP8_1 		0.771 0.884
SP8
M04517_2.00 		Homo sapiens
NMCMCGCCCMYH
DRKGGGCGKGKN		 SELEX
Yin et al.(2017)
SP8_eDBD_HT-SELEX 		0.771 0.884
SP9
M04645_2.00 		Homo sapiens
VMCMCGCCCMYH
DRKGGGCGKGKB		 SELEX
Yin et al.(2017)
SP9_eDBD_HT-SELEX 		0.771 0.884
SP8
M04518_2.00 		Homo sapiens
RHCACGCCCMYH
DRKGGGCGTGDY		 SELEX
Yin et al.(2017)
SP8_eDBD_Methyl-HT-SELEX 		0.771 0.884
SP9
M04646_2.00 		Homo sapiens
RYCACGCCCMYH
DRKGGGCGTGRY		 SELEX
Yin et al.(2017)
SP9_eDBD_Methyl-HT-SELEX 		0.771 0.884
Sp1
M03682_2.00 		Drosophila melanogaster
HNGCCACGCCCARK
MYTGGGCGTGGCND		 SELEX
Nitta et al.(2015)
Sp1_1 		0.758 0.870
Sp1
M06117_2.00 		Drosophila melanogaster
DHYMCGCCCMY
RKGGGCGKRDH		 B1H
Zhu et al.(2011)
Sp1_SANGER_5_FBgn0020378 		0.758 0.870
Sp1
M06118_2.00 		Drosophila melanogaster
NKHHMCGCCCMYNN
NNRKGGGCGKDDMN		 B1H
Zhu et al.(2011)
Sp1_SOLEXA_2.5_FBgn0020378 		0.758 0.870
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG005389.1 C2H2 ZF 281 305
Alligator_sinensis_CCG005389.1 C2H2 ZF 311 335
Alligator_sinensis_CCG005389.1 C2H2 ZF 341 363

Links

Other C2H2 ZF family TFs
Other Alligator sinensis TFs

184 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL012404 Aedes aegypti AAEL012404 I 0.758
Aan_R009569 Calypte anna Aan_R009569 I 0.789
AARA010384 Anopheles arabiensis AARA010384 I 0.758
ACEP25215 Atta cephalotes ACEP25215 I 0.758
ACUA022925 Anopheles culicifacies ACUA022925 I 0.758
ACYPI008529 Acyrthosiphon pisum ACYPI008529 I 0.758
AEPI000655 Anopheles epiroticus AEPI000655 I 0.758
AFAF010157 Anopheles farauti AFAF010157 I 0.758
AFUN011444 Anopheles funestus AFUN011444 I 0.758
AGAP000673 Anopheles gambiae AGAP000673 I 0.758
Alligator_sinensis_CCG014455.1 Alligator sinensis Alligator_sinensis_CCG014455.1 I 0.764
AMEC017534 Anopheles melas AMEC017534 I 0.758
AMEM002678 Anopheles merus AMEM002678 I 0.758
AMIN002038 Anopheles minimus AMIN002038 I 0.758
ASTEI01151 Anopheles stephensi ASTEI01151 I 0.758
BGIBMGA006943 Bombyx mori BGIBMGA006943 I 0.758
CapteG224157 Capitella teleta CapteG224157 I 0.771
CapteG39149 Capitella teleta CapteG39149 I 0.764
CapteG39158 Capitella teleta CapteG39158 I 0.771
CGI_10004780 Crassostrea gigas CGI_10004780 I 0.771
CGI_10004781 Crassostrea gigas CGI_10004781 I 0.758
CLEC009335 Cimex lectularius CLEC009335 I 0.758
Cmyd_10015831 Chelonia mydas Cmyd_10015831 I 0.764
Cmyd_10021667 Chelonia mydas Cmyd_10021667 I 0.827
DAPPUDRAFT_106303 Daphnia pulex DAPPUDRAFT_106303 I 0.771
SP7 Anolis carolinensis ENSACAG00000000606 I 0.827
SP6 Anolis carolinensis ENSACAG00000006831 I 0.764
ENSAMEG00000019390 Ailuropoda melanoleuca ENSAMEG00000019390 I 0.821
ENSAMXG00000004709 Astyanax mexicanus ENSAMXG00000004709 I 0.771
ENSAMXG00000015246 Astyanax mexicanus ENSAMXG00000015246 I 0.771
ENSAMXG00000020011 Astyanax mexicanus ENSAMXG00000020011 I 0.771
ENSAMXG00000024824 Astyanax mexicanus ENSAMXG00000024824 I 0.827
SP8 Bos taurus ENSBTAG00000002604 I 0.771
SP9 Bos taurus ENSBTAG00000014949 I 0.771
SP7 Bos taurus ENSBTAG00000033292 I 0.821
ENSBTAP00000005689-D1 Bos grunniens ENSBTAP00000005689-D1 I 0.821
SP7 Canis familiaris ENSCAFG00000025559 I 0.821
SP8 Callithrix jacchus ENSCJAG00000001245 I 0.771
SP7 Callithrix jacchus ENSCJAG00000018549 I 0.821
ENSCPOG00000019815 Cavia porcellus ENSCPOG00000019815 I 0.821
SP8 Cavia porcellus ENSCPOG00000026910 I 0.771
ENSCSAG00000013600 Chlorocebus sabaeus ENSCSAG00000013600 I 0.771
ENSCSAG00000014648 Chlorocebus sabaeus ENSCSAG00000014648 I 0.771
ENSCSAG00000019258 Chlorocebus sabaeus ENSCSAG00000019258 I 0.821
sp8a Danio rerio ENSDARG00000011870 I 0.771
sp7 Danio rerio ENSDARG00000019516 I 0.827
sp8b Danio rerio ENSDARG00000056666 I 0.771
sp9 Danio rerio ENSDARG00000099374 I 0.771
SP7 Dasypus novemcinctus ENSDNOG00000013009 I 0.821
SP9 Dasypus novemcinctus ENSDNOG00000019150 I 0.771
ENSECAG00000002849 Equus caballus ENSECAG00000002849 I 0.764
SP7 Equus caballus ENSECAG00000020140 I 0.821
SP8 Erinaceus europaeus ENSEEUG00000000621 I 0.771
SP7 Felis catus ENSFCAG00000030976 I 0.821
SP8 Homo sapiens ENSG00000164651 D 0.771
SP7 Homo sapiens ENSG00000170374 D 0.821
SP9 Homo sapiens ENSG00000217236 D 0.771
SP9 Gasterosteus aculeatus ENSGACG00000004757 I 0.771
sp7 Gasterosteus aculeatus ENSGACG00000006641 I 0.827
sp8b Gasterosteus aculeatus ENSGACG00000008062 I 0.771
SP9 Gorilla gorilla ENSGGOG00000007345 I 0.771
SP7 Gorilla gorilla ENSGGOG00000015818 I 0.821
ENSGMOG00000001278 Gadus morhua ENSGMOG00000001278 I 0.827
ENSGMOG00000004590 Gadus morhua ENSGMOG00000004590 I 0.771
ENSGMOG00000008078 Gadus morhua ENSGMOG00000008078 I 0.771
ENSLACG00000013206 Latimeria chalumnae ENSLACG00000013206 I 0.807
SP7 Loxodonta africana ENSLAFG00000013129 I 0.821
ENSLOCG00000005679 Lepisosteus oculatus ENSLOCG00000005679 I 0.827
ENSLOCG00000007391 Lepisosteus oculatus ENSLOCG00000007391 I 0.771
ENSLOCG00000011486 Lepisosteus oculatus ENSLOCG00000011486 I 0.771
ENSMEUG00000012808 Macropus eugenii ENSMEUG00000012808 I 0.771
SP8 Macaca mulatta ENSMMUG00000003722 I 0.771
SP7 Macaca mulatta ENSMMUG00000022039 I 0.821
SP9 Macaca mulatta ENSMMUG00000023005 I 0.771
SP8 Monodelphis domestica ENSMODG00000001375 I 0.771
SP9 Monodelphis domestica ENSMODG00000009303 I 0.771
ENSMPUG00000006036 Mustela putorius furo ENSMPUG00000006036 I 0.821
ENSMPUG00000013919 Mustela putorius furo ENSMPUG00000013919 I 0.771
Sp8 Mus musculus ENSMUSG00000048562 I 0.771
Sp7 Mus musculus ENSMUSG00000060284 D 0.821
Sp9 Mus musculus ENSMUSG00000068859 I 0.771
ENSNLEG00000016729 Nomascus leucogenys ENSNLEG00000016729 I 0.771
ENSNLEG00000017701 Nomascus leucogenys ENSNLEG00000017701 I 0.821
SP7 Oryctolagus cuniculus ENSOCUG00000003811 I 0.821
SP7 Otolemur garnettii ENSOGAG00000032371 I 0.821
SP9 Otolemur garnettii ENSOGAG00000034062 I 0.771
ENSONIG00000002896 Oreochromis niloticus ENSONIG00000002896 I 0.771
ENSONIG00000005114 Oreochromis niloticus ENSONIG00000005114 I 0.827
ENSONIG00000008657 Oreochromis niloticus ENSONIG00000008657 I 0.771
ENSONIG00000010871 Oreochromis niloticus ENSONIG00000010871 I 0.768
SP7 Ochotona princeps ENSOPRG00000015704 I 0.821
sp7 Oryzias latipes ENSORLG00000005215 I 0.827
sp8b Oryzias latipes ENSORLG00000007242 I 0.771
SP9 Oryzias latipes ENSORLG00000017492 I 0.771
ENSP00000302812 Macaca fascicularis ENSP00000302812 I 0.821
ENSPANG00000014421 Papio anubis ENSPANG00000014421 I 0.821
ENSPANG00000016221 Papio anubis ENSPANG00000016221 I 0.771
ENSPANG00000023061 Papio anubis ENSPANG00000023061 I 0.771
SP7 Procavia capensis ENSPCAG00000012545 I 0.821
SP9 Procavia capensis ENSPCAG00000012721 I 0.771
ENSPFOG00000001566 Poecilia formosa ENSPFOG00000001566 I 0.764
ENSPFOG00000007503 Poecilia formosa ENSPFOG00000007503 I 0.827
ENSPFOG00000007998 Poecilia formosa ENSPFOG00000007998 I 0.771
ENSPFOG00000013459 Poecilia formosa ENSPFOG00000013459 I 0.771
ENSPPYG00000017747 Pongo abelii ENSPPYG00000017747 I 0.771
SP7 Pan troglodytes ENSPTRG00000005013 I 0.821
SP8 Pan troglodytes ENSPTRG00000018968 I 0.771
SP8 Pteropus vampyrus ENSPVAG00000005109 I 0.771
SP7 Pteropus vampyrus ENSPVAG00000012279 I 0.821
Sp8 Rattus norvegicus ENSRNOG00000005943 I 0.771
Sp7 Rattus norvegicus ENSRNOG00000014082 I 0.821
Sp9 Rattus norvegicus ENSRNOG00000028187 I 0.771
ENSSHAG00000005844 Sarcophilus harrisii ENSSHAG00000005844 I 0.821
ENSSSCG00000000269 Sus scrofa ENSSSCG00000000269 I 0.821
ENSSSCG00000029407 Sus scrofa ENSSSCG00000029407 I 0.771
ENSSTOG00000025061 Ictidomys tridecemlineatus ENSSTOG00000025061 I 0.821
ENSSTOG00000028058 Ictidomys tridecemlineatus ENSSTOG00000028058 I 0.771
ENSTGUG00000002679 Taeniopygia guttata ENSTGUG00000002679 I 0.771
SP8 Tetraodon nigroviridis ENSTNIG00000002903 I 0.764
sp7 Tetraodon nigroviridis ENSTNIG00000007064 I 0.827
SP9 Tetraodon nigroviridis ENSTNIG00000016949 I 0.771
sp8b Tetraodon nigroviridis ENSTNIG00000018442 I 0.771
SP8 Takifugu rubripes ENSTRUG00000008153 I 0.764
sp7 Takifugu rubripes ENSTRUG00000014417 I 0.827
sp8b Takifugu rubripes ENSTRUG00000015810 I 0.771
SP9 Takifugu rubripes ENSTRUG00000017609 I 0.771
SP7 Tursiops truncatus ENSTTRG00000002784 I 0.821
SP8 Tursiops truncatus ENSTTRG00000013387 I 0.771
ENSXMAG00000000590 Xiphophorus maculatus ENSXMAG00000000590 I 0.764
ENSXMAG00000005380 Xiphophorus maculatus ENSXMAG00000005380 I 0.771
ENSXMAG00000017840 Xiphophorus maculatus ENSXMAG00000017840 I 0.827
estExt_fgenesh2_pg.C_1190037 Branchiostoma floridae estExt_fgenesh2_pg.C_1190037 I 0.758
estExt_fgenesh2_pg.C_1190051 Branchiostoma floridae estExt_fgenesh2_pg.C_1190051 I 0.758
estExt_fgenesh2_pg.C_1820063 Branchiostoma floridae estExt_fgenesh2_pg.C_1820063 I 0.758
e_gw.339.61.1 Branchiostoma floridae e_gw.339.61.1 I 0.758
Sp1 Drosophila melanogaster FBgn0020378 D 0.758
GA12282 Drosophila pseudoobscura FBgn0072328 I 0.758
GF22533 Drosophila ananassae FBgn0099527 I 0.758
GG18323 Drosophila erecta FBgn0110539 I 0.758
GH11802 Drosophila grimshawi FBgn0119282 I 0.758
GI15983 Drosophila mojavensis FBgn0138732 I 0.758
GL16372 Drosophila persimilis FBgn0153976 I 0.758
GM11386 Drosophila sechellia FBgn0166329 I 0.758
GK25356 Drosophila willistoni FBgn0227315 I 0.758
GE17808 Drosophila yakuba FBgn0235250 I 0.758
HHAL010843-PA Halyomorpha halys HHAL010843-PA I 0.758
HMEL005340 Heliconius melpomene HMEL005340 I 0.758
ISCW023685 Ixodes scapularis ISCW023685 I 0.771
KGM_00012 Danaus plexippus KGM_00012 I 0.758
L798_09167 Zootermopsis nevadensis L798_09167 I 0.758
LCUP010370 Lucilia cuprina LCUP010370 I 0.758
LDEC008343 Leptinotarsa decemlineata LDEC008343 I 0.758
LLOJ007007 Lutzomyia longipalpis LLOJ007007 I 0.758
LotgiG126754 Lottia gigantea LotgiG126754 I 0.758
LotgiG58476 Lottia gigantea LotgiG58476 I 0.758
MCINX013792 Melitaea cinxia MCINX013792 I 0.758
MESCA000017 Megaselia scalaris MESCA000017 I 0.758
Myotis_brandtii_SP7_10022993 Myotis brandtii Myotis_brandtii_SP7_10022993 I 0.821
NEMVEDRAFT_v1g27142 Nematostella vectensis NEMVEDRAFT_v1g27142 I 0.758
NV12527 Nasonia vitripennis NV12527 I 0.758
Ocbimv22028511m.g Octopus bimaculoides Ocbimv22028511m.g I 0.764
Ocbimv22028516m.g Octopus bimaculoides Ocbimv22028516m.g I 0.771
Ogr12594 Ophisaurus gracilis Ogr12594 I 0.764
Ogr16980 Ophisaurus gracilis Ogr16980 I 0.827
PHUM453610 Pediculus humanus PHUM453610 I 0.758
PPAI004544 Phlebotomus papatasi PPAI004544 I 0.758
PPAI008544 Phlebotomus papatasi PPAI008544 I 0.756
Pvit_07436 Pogona vitticeps Pvit_07436 I 0.827
Pvit_11839 Pogona vitticeps Pvit_11839 I 0.771
RPRC004788 Rhodnius prolixus RPRC004788 I 0.758
Sakowv30026942m.g Saccoglossus kowalevskii Sakowv30026942m.g I 0.771
SINV13577 Solenopsis invicta SINV13577 I 0.758
SMAR004954 Strigamia maritima SMAR004954 I 0.771
SPU_011280 Strongylocentrotus purpuratus SPU_011280 I 0.771
SPU_016114 Strongylocentrotus purpuratus SPU_016114 I 0.771
TC011697 Tribolium castaneum TC011697 I 0.758
sp8.L Xenopus laevis XB-GENE-1216193 I 0.771
sp9 Xenopus tropicalis XB-GENE-5931012 I 0.771
sp7 Xenopus tropicalis XB-GENE-954330 I 0.811
sp7.L Xenopus laevis XB-GENE-954333 I 0.811
XP_002933331 Xenopus tropicalis XP_002933331 I 0.771
XP_002933332 Xenopus tropicalis XP_002933332 I 0.771
XP_002933333 Xenopus tropicalis XP_002933333 I 0.771
YQE_04342 Dendroctonus ponderosae YQE_04342 I 0.758