Gfo_R002632 (Geospiza fortis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Gfo_R002632 T135681_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZBTB48
M08391_2.00 		Homo sapiens
HHDNTCCCTDR
YHAGGGANHDD		 ChIP-seq
Schmitges et al.(2016)
P10074.MEME 		0.809 0.952
ZBTB48
M08956_2.00 		Homo sapiens
BHBRVTCCCTDR
YHAGGGABYVDV		 Misc
Kulakovskiy et al.(2013)
ZBT48_HUMAN.H11MO.0.C 		0.809 0.952
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R002632 C2H2 ZF 40 62
Gfo_R002632 C2H2 ZF 68 89
Gfo_R002632 C2H2 ZF 99 121
Gfo_R002632 C2H2 ZF 127 150
Gfo_R002632 C2H2 ZF 185 208
Gfo_R002632 C2H2 ZF 214 236
Gfo_R002632 C2H2 ZF 242 264
Gfo_R002632 C2H2 ZF 270 293
Gfo_R002632 C2H2 ZF 299 321
Gfo_R002632 C2H2 ZF 327 349

Links

Other C2H2 ZF family TFs
Other Geospiza fortis TFs

39 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
L892_g21043 Steinernema scapterisci L892_g21043 N