Gfo_R012197 (Geospiza fortis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Gfo_R012197 T135840_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R012197 C2H2 ZF 562 584
Gfo_R012197 C2H2 ZF 590 612
Gfo_R012197 C2H2 ZF 618 635
Gfo_R012197 C2H2 ZF 646 668

Links

Other C2H2 ZF family TFs
Other Geospiza fortis TFs

30 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30076.m004464 Ricinus communis 30076.m004464 I 0.000
30171.m000418 Ricinus communis 30171.m000418 I 0.000
AMTR_s00001p00272270 Amborella trichopoda AMTR_s00001p00272270 I 0.000
AMTR_s00044p00072910 Amborella trichopoda AMTR_s00044p00072910 I 0.000
Aquca_002_01329 Aquilegia coerulea Aquca_002_01329 I 0.000
Aquca_013_00001 Aquilegia coerulea Aquca_013_00001 I 0.000
LHY Arabidopsis thaliana AT1G01060 D 0.000
CCA1 Arabidopsis thaliana AT2G46830 D 0.000
BGIOSGA028019 Oryza indica BGIOSGA028019 I 0.000
Bo3g001090 Brassica oleracea Bo3g001090 I 0.000
Bo4g006930 Brassica oleracea Bo4g006930 I 0.000
Bo5g002760 Brassica oleracea Bo5g002760 I 0.000
Bostr.25993s0083 Boechera stricta Bostr.25993s0083 I 0.000
Bostr.5325s0026 Boechera stricta Bostr.5325s0026 I 0.000
Bra004503 Brassica rapa Bra004503 I 0.000
Bra030496 Brassica rapa Bra030496 I 0.000
Bra033291 Brassica rapa Bra033291 I 0.000
BRADI1G29680 Brachypodium distachyon BRADI1G29680 I 0.000
BRADI3G16515 Brachypodium distachyon BRADI3G16515 I 0.000
BRADI3G51960 Brachypodium distachyon BRADI3G51960 I 0.000
Cagra.0050s0017 Capsella grandiflora Cagra.0050s0017 I 0.000
Cagra.1968s0051 Capsella grandiflora Cagra.1968s0051 I 0.000
Carubv10008551m.g Capsella rubella Carubv10008551m.g I 0.000
Carubv10022831m.g Capsella rubella Carubv10022831m.g I 0.000
cassava33517.m1 Manihot esculenta cassava33517.m1 I 0.000
cassava35529.valid.m1 Manihot esculenta cassava35529.valid.m1 I 0.000
cassava35530.valid.m1 Manihot esculenta cassava35530.valid.m1 I 0.000
cassava35531.valid.m1 Manihot esculenta cassava35531.valid.m1 I 0.000
cassava36126.valid.m1 Manihot esculenta cassava36126.valid.m1 I 0.000
chr3.CM0208.410.nd Lotus japonicus chr3.CM0208.410.nd I 0.000
Ciclev10011554m.g Citrus clementina Ciclev10011554m.g I 0.000
Ciclev10018964m.g Citrus clementina Ciclev10018964m.g I 0.000
Cucsa.349800 Cucumis sativus Cucsa.349800 I 0.000
estExt_fgenesh2_pg.C_Chr_080053 Micromonas sp RCC299 estExt_fgenesh2_pg.C_Chr_080053 I 0.000
Eucgr.D02651 Eucalyptus grandis Eucgr.D02651 I 0.000
Eucgr.F02906 Eucalyptus grandis Eucgr.F02906 I 0.000
EuGene.0000110367 Micromonas pusilla EuGene.0000110367 I 0.000
evm.TU.supercontig_1055.1 Carica papaya evm.TU.supercontig_1055.1 I 0.000
e_gw1.96.88.1 Physcomitrella patens e_gw1.96.88.1 I 0.000
F775_18043 Aegilops tauschii F775_18043 I 0.000
F775_26024 Aegilops tauschii F775_26024 I 0.000
GLYMA03G42260 Glycine max GLYMA03G42260 I 0.000
GLYMA07G05410 Glycine max GLYMA07G05410 I 0.000
GLYMA16G01980 Glycine max GLYMA16G01980 I 0.000
GLYMA19G45030 Glycine max GLYMA19G45030 I 0.000
Gorai.001G069700 Gossypium raimondii Gorai.001G069700 I 0.000
Gorai.007G113900 Gossypium raimondii Gorai.007G113900 I 0.000
Gorai.008G131800 Gossypium raimondii Gorai.008G131800 I 0.000
Gorai.008G132000 Gossypium raimondii Gorai.008G132000 I 0.000
GRMZM2G014902 Zea mays GRMZM2G014902 I 0.000
GRMZM2G170322 Zea mays GRMZM2G170322 I 0.000
GRMZM2G175265 Zea mays GRMZM2G175265 I 0.000
GSMUA_Achr10G06560_001 Musa acuminata GSMUA_Achr10G06560_001 I 0.000
GSMUA_Achr1G06360_001 Musa acuminata GSMUA_Achr1G06360_001 I 0.000
GSMUA_AchrUn_randomG02340_001 Musa acuminata GSMUA_AchrUn_randomG02340_001 I 0.000
GSMUA_AchrUn_randomG03000_001 Musa acuminata GSMUA_AchrUn_randomG03000_001 I 0.000
gw1.325.30.1 Physcomitrella patens gw1.325.30.1 I 0.000
gw1.8.161.1 Volvox carteri gw1.8.161.1 I 0.000
LPERR08G03480 Leersia perrieri LPERR08G03480 I 0.000
Lus10005134.g Linum usitatissimum Lus10005134.g I 0.000
Lus10010100.g Linum usitatissimum Lus10010100.g I 0.000
Lus10030184.g Linum usitatissimum Lus10030184.g I 0.000
mgf011909m Mimulus guttatus mgf011909m I 0.000
mgf014004m Mimulus guttatus mgf014004m I 0.000
mgf021826m Mimulus guttatus mgf021826m I 0.000
MLOC_14118 Hordeum vulgare MLOC_14118 I 0.000
MTR_7g118330 Medicago truncatula MTR_7g118330 I 0.000
OB06G35920 Oryza brachyantha OB06G35920 I 0.000
OB08G13700 Oryza brachyantha OB08G13700 I 0.000
OGLUM08G03510 Oryza glumaepatula OGLUM08G03510 I 0.000
OLONG_000103 Oryza longistaminata OLONG_000103 I 0.000
OMERI08G03470 Oryza meridionalis OMERI08G03470 I 0.000
ONIVA08G03410 Oryza nivara ONIVA08G03410 I 0.000
OPUNC08G03280 Oryza punctata OPUNC08G03280 I 0.000
orange1.1g004262m.g Citrus sinensis orange1.1g004262m.g I 0.000
orange1.1g012625m.g Citrus sinensis orange1.1g012625m.g I 0.000
ORGLA08G0028700 Oryza glaberrima ORGLA08G0028700 I 0.000
OS08G0157600 Oryza sativa OS08G0157600 D 0.000
Pavir.Ab02717 Panicum virgatum Pavir.Ab02717 I 0.000
Pavir.Fa01905 Panicum virgatum Pavir.Fa01905 I 0.000
Pavir.J34894 Panicum virgatum Pavir.J34894 I 0.000
PDK_20s1414244g001 Phoenix dactylifera PDK_20s1414244g001 I 0.000
PGSC0003DMG400011294 Solanum tuberosum PGSC0003DMG400011294 I 0.000
PGSC0003DMG400021459 Solanum tuberosum PGSC0003DMG400021459 I 0.000
PK20866.1 Cannabis sativa PK20866.1 I 0.000
Pm028731 Prunus mume Pm028731 I 0.000
POPTR_0002s18170 Populus trichocarpa POPTR_0002s18170 I 0.000
POPTR_0004s07270 Populus trichocarpa POPTR_0004s07270 I 0.000
POPTR_0014s10240 Populus trichocarpa POPTR_0014s10240 I 0.000
POPTR_0017s01380 Populus trichocarpa POPTR_0017s01380 I 0.000
PRUPE_ppa001765mg Prunus persica PRUPE_ppa001765mg I 0.000
PRUPE_ppa005083mg Prunus persica PRUPE_ppa005083mg I 0.000
SapurV1A.0003s0380 Salix purpurea SapurV1A.0003s0380 I 0.000
SapurV1A.0162s0390 Salix purpurea SapurV1A.0162s0390 I 0.000
Sb04g031590 Sorghum bicolor Sb04g031590 I 0.000
Sb07g003870 Sorghum bicolor Sb07g003870 I 0.000
CCA1 Arabidopsis lyrata scaffold_403655.1 I 0.000
SELMODRAFT_19475 Selaginella moellendorffii SELMODRAFT_19475 I 0.000
SELMODRAFT_29451 Selaginella moellendorffii SELMODRAFT_29451 I 0.000
Si014685m.g Setaria italica Si014685m.g I 0.000
Si017289m.g Setaria italica Si017289m.g I 0.000
Solyc02g036370.2 Solanum lycopersicum Solyc02g036370.2 I 0.000
Solyc10g005080.2 Solanum lycopersicum Solyc10g005080.2 I 0.000
TCM_005021 Theobroma cacao TCM_005021 I 0.000
Thhalv10007028m.g Eutrema salsugineum Thhalv10007028m.g I 0.000
Thhalv10008035m.g Eutrema salsugineum Thhalv10008035m.g I 0.000
Traes_6BL_2F2381640 Triticum aestivum Traes_6BL_2F2381640 I 0.000
Traes_7AL_19F222799 Triticum aestivum Traes_7AL_19F222799 I 0.000
Traes_7BL_998EC9F74 Triticum aestivum Traes_7BL_998EC9F74 I 0.000
Traes_7DL_310E46F15 Triticum aestivum Traes_7DL_310E46F15 I 0.000
TRIUR3_13396 Triticum urartu TRIUR3_13396 I 0.000
RVE1 Vitis vinifera VIT_04s0079g00410 I 0.000
VIT_15s0048g02410 Vitis vinifera VIT_15s0048g02410 I 0.000