Pvit_01837 (Pogona vitticeps)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Pvit_01837 T136878_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BCL6
M00228_2.00 		Homo sapiens
NNVNDVRANN
NNTYBHNBNN		 PBM
Barrera et al.(2016)
BCL6_REF 		0.789 0.971
BCL6
M04424_2.00 		Homo sapiens
NYGCTTTCKAGGAAHN
NDTTCCTMGAAAGCRN		 SELEX
Yin et al.(2017)
BCL6_eDBD_HT-SELEX_1 		0.789 0.971
BCL6
M04425_2.00 		Homo sapiens
NDTTCCTMGAWWRCVN
NBGYWWTCKAGGAAHN		 SELEX
Yin et al.(2017)
BCL6_eDBD_HT-SELEX_2 		0.789 0.971
Bcl6
M08097_2.00 		Mus musculus
NDCYYTCYAGGAAN
NTTCCTRGARRGHN		 ChIP-seq
Mathelier et al.(2014)
MA0463.1 		0.789 0.971
Bcl6
M08024_2.00 		Mus musculus
HYNBHHWBWSHTCHYNYYYYYYNBYYHYYH
DRRDRRVNRRRRRRNRDGADSWVWDDVNRD		 ChIP-seq
Chen et al.(2011)
SRP001843_Bcl6_IgG_LPSstim 		0.789 0.971
BCL6
M08877_2.00 		Homo sapiens
NNMYYTCYAGGAA
TTCCTRGARRKNN		 Misc
Kulakovskiy et al.(2013)
BCL6_HUMAN.H11MO.0.A 		0.789 0.971
Bcl6
M08972_2.00 		Mus musculus
NNMTYTCYAGGAA
TTCCTRGARAKNN		 Misc
Kulakovskiy et al.(2013)
BCL6_MOUSE.H11MO.0.A 		0.789 0.971
Bcl6
M09513_2.00 		Mus musculus
NNNNYTTCYWGGAAN
NTTCCWRGAARNNNN		 Misc
Heinz et al.(2010)
Liver-Bcl6_GSE31578 		0.789 0.971
BCL6
M10180_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BCL6_01 		0.789 0.971
BCL6
M10181_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BCL6_02 		0.789 0.971
BCL6
M10182_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BCL6_Q3_01 		0.789 0.971
BCL6
M10183_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BCL6_Q3 		0.789 0.971
BCL6
M10184_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BCL6_Q6 		0.789 0.971
BCL6
M04426_2.00 		Homo sapiens
NTGCTTTCTAGGAAHN
NDTTCCTAGAAAGCAN		 SELEX
Yin et al.(2017)
BCL6_eDBD_Methyl-HT-SELEX_1 		0.789 0.971
BCL6
M04427_2.00 		Homo sapiens
NDTTCCTMGAWWRCVN
NBGYWWTCKAGGAAHN		 SELEX
Yin et al.(2017)
BCL6_eDBD_Methyl-HT-SELEX_2 		0.789 0.971
BCL6
M00227_2.00 		Homo sapiens
NTAATTRWNN
NNWYAATTAN		 PBM
Barrera et al.(2016)
BCL6_H676Y 		0.782 0.935
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pvit_01837 C2H2 ZF 422 445
Pvit_01837 C2H2 ZF 450 472
Pvit_01837 C2H2 ZF 478 500
Pvit_01837 C2H2 ZF 506 528
Pvit_01837 C2H2 ZF 534 556
Pvit_01837 C2H2 ZF 562 585

Links

Other C2H2 ZF family TFs
Other Pogona vitticeps TFs

53 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
A_03808 Schistosoma haematobium A_03808 N
csin102518 Clonorchis sinensis csin102518 N
ECANG7_05291 Echinococcus canadensis ECANG7_05291 N
EmuJ_000712700 Echinococcus multilocularis EmuJ_000712700 N
HDID_0000996601 Hymenolepis diminuta HDID_0000996601 N
HmN_000525500 Hymenolepis microstoma HmN_000525500 N
HNAJ_0001235101 Hymenolepis nana HNAJ_0001235101 N
MCOS_0000898001 Mesocestoides corti MCOS_0000898001 N
PXEA_0002605301 Protopolystoma xenopodis PXEA_0002605301 N
SCUD_0000031701 Schistosoma curassoni SCUD_0000031701 N
Smp_138230 Schistosoma mansoni Smp_138230 N
SMU15015104 Schmidtea mediterranea SMU15015104 N
T265_06319 Opisthorchis viverrini T265_06319 N
TsM_001167900 Taenia solium TsM_001167900 N