cassava16287.m1 (Manihot esculenta)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 cassava16287.m1 T137824_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT5G03510
M00860_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT14 		0.800 0.783
AT5G04390
M01857_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Weirauch et al.(2014)
pTH7158 		0.795 0.804
AT5G04390
M06819_2.00 		Arabidopsis thaliana
HHHHWHCACTN
NAGTGDWDDDD		 Dap-seq
OMalley et al.(2016)
At5g04390_col200_a 		0.795 0.804
ZAT7
M01855_2.00 		Arabidopsis thaliana
NVDBRCACTNNNN
NNNNAGTGYVHBN		 PBM
Weirauch et al.(2014)
pTH7540 		0.771 0.783
AT3G46070
M06813_2.00 		Arabidopsis thaliana
HYHHYHTCACTYHHH
DDDRAGTGADRDDRD		 Dap-seq
OMalley et al.(2016)
AT3G46070_col_a 		0.763 0.826
AT3G53600
M01856_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7188 		0.762 0.761
AT3G53600
M00858_2.00 		Arabidopsis thaliana
NNNNRSWN
NWSYNNNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT18 		0.762 0.761
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava16287.m1 C2H2 ZF 38 60
cassava16287.m1 C2H2 ZF 83 105

Links

Other C2H2 ZF family TFs
Other Manihot esculenta TFs

377 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACRE_019720 Acremonium chrysogenum ACRE_019720 I
BBA_05197 Beauveria bassiana BBA_05197 I
CFIO01_00482 Colletotrichum fioriniae CFIO01_00482 I
CGGC5_12955 Colletotrichum gloeosporioides CGGC5_12955 I
CH063_14099 Colletotrichum higginsianum CH063_14099 I
CHGG_04873 Chaetomium globosum CHGG_04873 I
CMQ_895 Grosmannia clavigera CMQ_895 I
Cob_03852 Colletotrichum orbiculare Cob_03852 I
CSUB01_05797 Colletotrichum sublineola CSUB01_05797 I
CTHT_0030250 Chaetomium thermophilum CTHT_0030250 I
estExt_fgenesh1_pg.C_30899 Cryphonectria parasitica estExt_fgenesh1_pg.C_30899 I
estExt_Genewise1.C_30584 Neurospora discreta estExt_Genewise1.C_30584 I
F503_05042 Ophiostoma piceae uamh F503_05042 I
FFUJ_04464 Fusarium fujikuroi FFUJ_04464 I
FGRRES_09594 Fusarium graminearum FGRRES_09594 I
FOXG_06298 Fusarium oxysporum FOXG_06298 I
FPSE_05872 Fusarium pseudograminearum FPSE_05872 I
FVEG_04149 Fusarium verticillioides FVEG_04149 I
GGTG_02924 Gaeumannomyces graminis GGTG_02924 I
GLRG_08311 Colletotrichum graminicola GLRG_08311 I
HMPREF1624_04110 Sporothrix schenckii HMPREF1624_04110 I
MAC_09133 Metarhizium acridum MAC_09133 I
MAJ_04708 Metarhizium majus MAJ_04708 I
MAM_06160 Metarhizium album MAM_06160 I
MANI_028168 Metarhizium anisopliae MANI_028168 I
MBR_07954 Metarhizium brunneum MBR_07954 I
MGG_01777 Magnaporthe oryzae MGG_01777 I
MGU_10634 Metarhizium guizhouense MGU_10634 I
MYCTH_2299337 Myceliophthora thermophila MYCTH_2299337 I
col-22 Neurospora crassa NCU04390 D
NechaG66570 Fusarium solani NechaG66570 I
NEUTE1DRAFT_60791 Neurospora tetrasperma NEUTE1DRAFT_60791 I
PODANS_3_3810 Podospora anserina PODANS_3_3810 I
PVAR5_1489 Byssochlamys spectabilis PVAR5_1489 I
S40285_05724 Stachybotrys chlorohalonata S40285_05724 I
S40288_08454 Stachybotrys chartarum S40288_08454 I
SAPIO_CDS7052 Scedosporium apiospermum SAPIO_CDS7052 I
SETTUDRAFT_31870 Setosphaeria turcica SETTUDRAFT_31870 I
SMAC_01754 Sordaria macrospora SMAC_01754 I
SPBR_05511 Sporothrix brasiliensis SPBR_05511 I
TRIATDRAFT_266867 Trichoderma atroviride TRIATDRAFT_266867 I
TRIREDRAFT_55759 Trichoderma reesei TRIREDRAFT_55759 I
TRIVIDRAFT_192982 Trichoderma virens TRIVIDRAFT_192982 I
UCRPA7_6855 Togninia minima UCRPA7_6855 I
UV8b_1050 Ustilaginoidea virens UV8b_1050 I
VDBG_00800 Verticillium alfalfae VDBG_00800 I
VDBG_00800 Verticillium albo atrum VDBG_00800 I
VHEMI03392 Torrubiella hemipterigena VHEMI03392 I
X797_008007 Metarhizium robertsii X797_008007 I