Cucsa.213470 (Cucumis sativus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Cucsa.213470 T137926_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT5G04390
M01857_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Weirauch et al.(2014)
pTH7158 		0.795 0.783
AT5G04390
M06819_2.00 		Arabidopsis thaliana
HHHHWHCACTN
NAGTGDWDDDD		 Dap-seq
OMalley et al.(2016)
At5g04390_col200_a 		0.795 0.783
AT5G03510
M00860_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT14 		0.795 0.739
ZAT7
M01855_2.00 		Arabidopsis thaliana
NVDBRCACTNNNN
NNNNAGTGYVHBN		 PBM
Weirauch et al.(2014)
pTH7540 		0.776 0.848
AT3G46070
M06813_2.00 		Arabidopsis thaliana
HYHHYHTCACTYHHH
DDDRAGTGADRDDRD		 Dap-seq
OMalley et al.(2016)
AT3G46070_col_a 		0.768 0.826
AT3G53600
M01856_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7188 		0.762 0.761
AT3G53600
M00858_2.00 		Arabidopsis thaliana
NNNNRSWN
NWSYNNNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT18 		0.762 0.761
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.213470.1 C2H2 ZF 54 76
Cucsa.213470.1 C2H2 ZF 91 113

Links

Other C2H2 ZF family TFs
Other Cucumis sativus TFs

370 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Afo_R005482 Aptenodytes forsteri Afo_R005482 N 0.000
Alligator_sinensis_CCG000203.1 Alligator sinensis Alligator_sinensis_CCG000203.1 N 0.000
Brh_R007650 Buceros rhinoceros Brh_R007650 N 0.000
USF3 Anolis carolinensis ENSACAG00000006745 N 0.000
ENSAMEG00000005235 Ailuropoda melanoleuca ENSAMEG00000005235 N 0.000
USF3 Bos taurus ENSBTAG00000021000 N 0.000
USF3 Canis familiaris ENSCAFG00000010692 N 0.000
USF3 Callithrix jacchus ENSCJAG00000020264 N 0.000
ENSCPOG00000006428 Cavia porcellus ENSCPOG00000006428 N 0.000
ENSCSAG00000006785 Chlorocebus sabaeus ENSCSAG00000006785 N 0.000
USF3 Dasypus novemcinctus ENSDNOG00000040900 N 0.000
USF3 Equus caballus ENSECAG00000024549 N 0.000
ENSFALG00000005129 Ficedula albicollis ENSFALG00000005129 N 0.000
USF3 Felis catus ENSFCAG00000004876 N 0.000
USF3 Homo sapiens ENSG00000176542 N 0.000
ENSGALG00000014808 Gallus gallus ENSGALG00000014808 N 0.000
USF3 Gorilla gorilla ENSGGOG00000001005 N 0.000
ENSLACG00000009844 Latimeria chalumnae ENSLACG00000009844 N 0.000
USF3 Loxodonta africana ENSLAFG00000009455 N 0.000
ENSLOCG00000003056 Lepisosteus oculatus ENSLOCG00000003056 N 0.000
USF3 Meleagris gallopavo ENSMGAG00000014246 N 0.000
USF3 Myotis lucifugus ENSMLUG00000004274 N 0.000
USF3 Monodelphis domestica ENSMODG00000018158 N 0.000
Usf3 Mus musculus ENSMUSG00000068284 N 0.000
ENSNLEG00000004615 Nomascus leucogenys ENSNLEG00000004615 N 0.000
ENSOARG00000019468 Ovis aries ENSOARG00000019468 N 0.000
USF3 Oryctolagus cuniculus ENSOCUG00000013550 N 0.000
USF3 Otolemur garnettii ENSOGAG00000032665 N 0.000
USF3 Ochotona princeps ENSOPRG00000014253 N 0.000
ENSP00000420721 Macaca fascicularis ENSP00000420721 N 0.000
ENSP00000420721-D1 Bos grunniens ENSP00000420721-D1 N 0.000
ENSPANG00000019193 Papio anubis ENSPANG00000019193 N 0.000
ENSPPYG00000013537 Pongo abelii ENSPPYG00000013537 N 0.000
USF3 Pan troglodytes ENSPTRG00000030159 N 0.000
USF3 Pteropus vampyrus ENSPVAG00000006151 N 0.000
Usf3 Rattus norvegicus ENSRNOG00000027756 N 0.000
ENSSHAG00000006667 Sarcophilus harrisii ENSSHAG00000006667 N 0.000
USF3 Sus scrofa ENSSSCG00000011918 N 0.000
ENSSTOG00000029223 Ictidomys tridecemlineatus ENSSTOG00000029223 N 0.000
ENSTGUG00000013363 Taeniopygia guttata ENSTGUG00000013363 N 0.000
USF3 Tursiops truncatus ENSTTRG00000000281 N 0.000
USF3 Vicugna pacos ENSVPAG00000011950 N 0.000
Gfo_R000246 Geospiza fortis Gfo_R000246 N 0.000
Myotis_brandtii_KIAA2018_10016078 Myotis brandtii Myotis_brandtii_KIAA2018_10016078 N 0.000
Pvit_04479 Pogona vitticeps Pvit_04479 N 0.000
Tal_R000800 Tyto alba Tal_R000800 N 0.000
usf3 Xenopus tropicalis XB-GENE-6459248 N 0.000