estExt_fgenesh2_pg.C_1600113 (Branchiostoma floridae)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 estExt_fgenesh2_pg.C_1600113 T138625_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
sob
M03674_2.00 		Drosophila melanogaster
RCTACYGNRTTACGCV
BGCGTAAYNCRGTAGY		 SELEX
Nitta et al.(2015)
sob_1 		0.805 0.887
sob
M03675_2.00 		Drosophila melanogaster
NGCGTAABNSNRGTAGY
RCTACYNSNVTTACGCN		 SELEX
Nitta et al.(2015)
sob_2 		0.805 0.887
sob
M06088_2.00 		Drosophila melanogaster
GCTWCTGBDNBDV
BHVNHVCAGWAGC		 B1H
Zhu et al.(2011)
sob_SANGER_10_FBgn0004892 		0.805 0.887
sob
M06089_2.00 		Drosophila melanogaster
BDGCTACYGKDBNN
NNVHMCRGTAGCHV		 B1H
Zhu et al.(2011)
sob_SOLEXA_5_FBgn0004892 		0.805 0.887
bowl
M03676_2.00 		Drosophila melanogaster
GCGTAABACNRGKAGYN
NRCTMCYNGTVTTACGC		 SELEX
Nitta et al.(2015)
bowl_1 		0.803 0.870
bowl
M03677_2.00 		Drosophila melanogaster
NGCTACYGTRTTACGCN
NGCGTAAYACRGTAGCN		 SELEX
Nitta et al.(2015)
bowl_2 		0.803 0.870
bowl
M06090_2.00 		Drosophila melanogaster
RCTWCYGK
MCRGWAGY		 B1H
Zhu et al.(2011)
bowl_SANGER_5_FBgn0004893 		0.803 0.870
OSR2
M04521_2.00 		Homo sapiens
NGCTACYGBD
HVCRGTAGCN		 SELEX
Yin et al.(2017)
OSR2_eDBD_HT-SELEX 		0.799 0.930
OSR2
M08324_2.00 		Homo sapiens
NBDGCTNCTGN
NCAGNAGCHVN		 ChIP-seq
Schmitges et al.(2016)
Q8N2R0.MEME 		0.799 0.930
OSR2
M08908_2.00 		Homo sapiens
NBHNYWGCTNCTSHDB
VHDSAGNAGCWRNDVN		 Misc
Kulakovskiy et al.(2013)
OSR2_HUMAN.H11MO.0.C 		0.799 0.930
OSR2
M04522_2.00 		Homo sapiens
NGCTACTGND
HNCAGTAGCN		 SELEX
Yin et al.(2017)
OSR2_eDBD_Methyl-HT-SELEX 		0.799 0.930
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
estExt_fgenesh2_pg.C_1600113 C2H2 ZF 468 490
estExt_fgenesh2_pg.C_1600113 C2H2 ZF 496 518
estExt_fgenesh2_pg.C_1600113 C2H2 ZF 524 546
estExt_fgenesh2_pg.C_1600113 C2H2 ZF 552 574
estExt_fgenesh2_pg.C_1600113 C2H2 ZF 580 602

Links

Other C2H2 ZF family TFs
Other Branchiostoma floridae TFs

107 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AALB003340 Anopheles albimanus AALB003340 I 0.000
AARA009757 Anopheles arabiensis AARA009757 I 0.000
ACOC_0000703501 Angiostrongylus costaricensis ACOC_0000703501 I 0.000
ACUA003826 Anopheles culicifacies ACUA003826 I 0.000
ADIR006616 Anopheles dirus ADIR006616 I 0.000
AEPI001687 Anopheles epiroticus AEPI001687 I 0.000
AMIN002618 Anopheles minimus AMIN002618 I 0.000
ANCCAN_23624 Ancylostoma caninum ANCCAN_23624 I 0.000
ANCCAN_24706 Ancylostoma caninum ANCCAN_24706 I 0.000
ANCCEY_02877 Ancylostoma ceylanicum ANCCEY_02877 I 0.000
ANCDUO_15205 Ancylostoma duodenale ANCDUO_15205 I 0.000
ANCDUO_20174 Ancylostoma duodenale ANCDUO_20174 I 0.000
ASIM_0001696801 Anisakis simplex ASIM_0001696801 N 0.000
ASU_00242 Ascaris suum ASU_00242 I 0.000
Bm5024 Brugia malayi Bm5024 I 0.000
Cflo_00868--XP_392355.3_APIME Camponotus floridanus Cflo_00868--XP_392355.3_APIME I 0.000
CGOC_0000822101 Cylicostephanus goldi CGOC_0000822101 I 0.000
D917_07791 Trichinella nativa D917_07791 I 0.000
D918_02805 Trichuris suis D918_02805 I 0.000
DICVIV_00921 Dictyocaulus viviparus DICVIV_00921 I 0.000
DICVIV_00922 Dictyocaulus viviparus DICVIV_00922 N 0.000
DME_0000841401 Dracunculus medinensis DME_0000841401 I 0.000
EVEC_0001110501 Enterobius vermicularis EVEC_0001110501 I 0.000
HCOI01824000 Haemonchus contortus HCOI01824000 I 0.000
HCOI02128500 Haemonchus contortus HCOI02128500 I 0.000
L596_g9976 Steinernema carpocapsae L596_g9976 I 0.000
L889_g22574 Steinernema feltiae L889_g22574 I 0.000
L892_g25141 Steinernema scapterisci L892_g25141 I 0.000
L893_g28279 Steinernema glaseri L893_g28279 I 0.000
L898_g8569 Steinernema monticolum L898_g8569 I 0.000
LCUP011134 Lucilia cuprina LCUP011134 I 0.000
LOAG_13494 Loa loa LOAG_13494 N 0.000
LOAG_14553 Loa loa LOAG_14553 I 0.000
nAv.1.0.1.g00051 Acanthocheilonema viteae nAv.1.0.1.g00051 N 0.000
NBR_0000066801 Nippostrongylus brasiliensis NBR_0000066801 I 0.000
nDi.2.2.2.g11480 Dirofilaria immitis nDi.2.2.2.g11480 N 0.000
NECAME_07738 Necator americanus NECAME_07738 I 0.000
NECAME_07739 Necator americanus NECAME_07739 I 0.000
nLs.2.1.2.g05094 Litomosoides sigmodontis nLs.2.1.2.g05094 N 0.000
nLs.2.1.2.g05095 Litomosoides sigmodontis nLs.2.1.2.g05095 I 0.000
nOo.2.0.1.g10265 Onchocerca ochengi nOo.2.0.1.g10265 I 0.000
PPAI010076 Phlebotomus papatasi PPAI010076 I 0.000
PTRK_0001568700 Parastrongyloides trichosuri PTRK_0001568700 I 0.000
SBAD_0000068201 Soboliphyme baturini SBAD_0000068201 I 0.000
SINV18378 Solenopsis invicta SINV18378 I 0.000
SPAL_0001624500 Strongyloides papillosus SPAL_0001624500 I 0.000
SSTP_0000359900 Strongyloides stercoralis SSTP_0000359900 I 0.000
SVE_0442300 Strongyloides venezuelensis SVE_0442300 I 0.000
SVUK_0000405601 Strongylus vulgaris SVUK_0000405601 I 0.000
TELCIR_21732 Teladorsagia circumcincta TELCIR_21732 I 0.000
TELCIR_22329 Teladorsagia circumcincta TELCIR_22329 I 0.000
WBGene00244521 Onchocerca volvulus WBGene00244521 I 0.000
WUBG_06449 Wuchereria bancrofti WUBG_06449 I 0.000
WUBG_10304 Wuchereria bancrofti WUBG_10304 N 0.000
YQE_10516 Dendroctonus ponderosae YQE_10516 I 0.000