Ocbimv22019950m.g (Octopus bimaculoides)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Ocbimv22019950m.g T141230_2.00 JGI:Metazome (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
FEZF1
M08307_2.00 		Homo sapiens
NNBTGYYYTTTTNNN
NNNAAAARRRCAVNN		 ChIP-seq
Schmitges et al.(2016)
A0PJY2_1-5.RCADE 		0.794 0.906
FEZF1
M08889_2.00 		Homo sapiens
DYTGYYCWTTTN
NAAAWGRRCARH		 Misc
Kulakovskiy et al.(2013)
FEZF1_HUMAN.H11MO.0.C 		0.794 0.906
erm
M03686_2.00 		Drosophila melanogaster
TGATTGCTCWTTT
AAAWGAGCAATCA		 SELEX
Nitta et al.(2015)
CG31670_1 		0.790 0.899
erm
M06128_2.00 		Drosophila melanogaster
KWTGYKCWTTT
AAAWGMRCAWM		 B1H
Zhu et al.(2011)
CG31670_SANGER_5_FBgn0031375 		0.790 0.899
erm
M06129_2.00 		Drosophila melanogaster
BBRTTGCTCWTTTBN
NVAAAWGAGCAAYVV		 B1H
Zhu et al.(2011)
CG31670_SOLEXA_5_FBgn0031375 		0.790 0.899
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ocbimv22019950m.p C2H2 ZF 409 431
Ocbimv22019950m.p C2H2 ZF 437 459
Ocbimv22019950m.p C2H2 ZF 465 487
Ocbimv22019950m.p C2H2 ZF 493 515
Ocbimv22019950m.p C2H2 ZF 521 543
Ocbimv22019950m.p C2H2 ZF 549 572

Links

Other C2H2 ZF family TFs
Other Octopus bimaculoides TFs

176 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29830.m001444 Ricinus communis 29830.m001444 N 0.000
AMTR_s00044p00165760 Amborella trichopoda AMTR_s00044p00165760 N 0.000
Aquca_015_00350 Aquilegia coerulea Aquca_015_00350 N 0.000
RKD5 Arabidopsis thaliana AT4G35590 N 0.000
Bo1g006340 Brassica oleracea Bo1g006340 N 0.000
Bostr.7867s1419 Boechera stricta Bostr.7867s1419 N 0.000
Bra011626 Brassica rapa Bra011626 N 0.000
Cagra.2350s0102 Capsella grandiflora Cagra.2350s0102 N 0.000
Carubv10005148m.g Capsella rubella Carubv10005148m.g N 0.000
cassava26650.m1 Manihot esculenta cassava26650.m1 N 0.000
chr2.CM0272.20.nd Lotus japonicus chr2.CM0272.20.nd N 0.000
Ciclev10027531m.g Citrus clementina Ciclev10027531m.g N 0.000
Cla014580 Citrullus lanatus Cla014580 N 0.000
Cucsa.044270 Cucumis sativus Cucsa.044270 N 0.000
fgenesh2_kg.7__520__AT4G35590.1 Arabidopsis lyrata fgenesh2_kg.7__520__AT4G35590.1 N 0.000
gene13055-v1.0-hybrid Fragaria vesca gene13055-v1.0-hybrid N 0.000
GLYMA01G36360 Glycine max GLYMA01G36360 N 0.000
GLYMA11G09080 Glycine max GLYMA11G09080 N 0.000
Gorai.003G002500 Gossypium raimondii Gorai.003G002500 N 0.000
GSMUA_Achr8G13370_001 Musa acuminata GSMUA_Achr8G13370_001 N 0.000
MDP0000125133 Malus domestica MDP0000125133 N 0.000
MDP0000215412 Malus domestica MDP0000215412 N 0.000
MDP0000291622 Malus domestica MDP0000291622 N 0.000
MLOC_12609 Hordeum vulgare MLOC_12609 I 0.000
MTR_5g024070 Medicago truncatula MTR_5g024070 N 0.000
orange1.1g039420m.g Citrus sinensis orange1.1g039420m.g N 0.000
Pm026816 Prunus mume Pm026816 N 0.000
POPTR_0005s10400 Populus trichocarpa POPTR_0005s10400 N 0.000
PRUPE_ppa011563mg Prunus persica PRUPE_ppa011563mg N 0.000
SapurV1A.0085s0060 Salix purpurea SapurV1A.0085s0060 N 0.000
SELMODRAFT_73109 Selaginella moellendorffii SELMODRAFT_73109 N 0.000
SELMODRAFT_73110 Selaginella moellendorffii SELMODRAFT_73110 N 0.000
SELMODRAFT_73113 Selaginella moellendorffii SELMODRAFT_73113 N 0.000
TCM_000070 Theobroma cacao TCM_000070 N 0.000
Thhalv10027037m.g Eutrema salsugineum Thhalv10027037m.g N 0.000
VIT_04s0044g00060 Vitis vinifera VIT_04s0044g00060 N 0.000