Sakowv30016612m.g (Saccoglossus kowalevskii)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Sakowv30016612m.g T142291_2.00 JGI:Metazome (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
OSR2
M04521_2.00 		Homo sapiens
NGCTACYGBD
HVCRGTAGCN		 SELEX
Yin et al.(2017)
OSR2_eDBD_HT-SELEX 		0.813 0.974
OSR2
M08324_2.00 		Homo sapiens
NBDGCTNCTGN
NCAGNAGCHVN		 ChIP-seq
Schmitges et al.(2016)
Q8N2R0.MEME 		0.813 0.974
OSR2
M08908_2.00 		Homo sapiens
NBHNYWGCTNCTSHDB
VHDSAGNAGCWRNDVN		 Misc
Kulakovskiy et al.(2013)
OSR2_HUMAN.H11MO.0.C 		0.813 0.974
OSR2
M04522_2.00 		Homo sapiens
NGCTACTGND
HNCAGTAGCN		 SELEX
Yin et al.(2017)
OSR2_eDBD_Methyl-HT-SELEX 		0.813 0.974
sob
M03674_2.00 		Drosophila melanogaster
RCTACYGNRTTACGCV
BGCGTAAYNCRGTAGY		 SELEX
Nitta et al.(2015)
sob_1 		0.802 0.896
sob
M03675_2.00 		Drosophila melanogaster
NGCGTAABNSNRGTAGY
RCTACYNSNVTTACGCN		 SELEX
Nitta et al.(2015)
sob_2 		0.802 0.896
sob
M06088_2.00 		Drosophila melanogaster
GCTWCTGBDNBDV
BHVNHVCAGWAGC		 B1H
Zhu et al.(2011)
sob_SANGER_10_FBgn0004892 		0.802 0.896
sob
M06089_2.00 		Drosophila melanogaster
BDGCTACYGKDBNN
NNVHMCRGTAGCHV		 B1H
Zhu et al.(2011)
sob_SOLEXA_5_FBgn0004892 		0.802 0.896
bowl
M03676_2.00 		Drosophila melanogaster
GCGTAABACNRGKAGYN
NRCTMCYNGTVTTACGC		 SELEX
Nitta et al.(2015)
bowl_1 		0.793 0.878
bowl
M03677_2.00 		Drosophila melanogaster
NGCTACYGTRTTACGCN
NGCGTAAYACRGTAGCN		 SELEX
Nitta et al.(2015)
bowl_2 		0.793 0.878
bowl
M06090_2.00 		Drosophila melanogaster
RCTWCYGK
MCRGWAGY		 B1H
Zhu et al.(2011)
bowl_SANGER_5_FBgn0004893 		0.793 0.878
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
23933885_peptide C2H2 ZF 203 225
23933885_peptide C2H2 ZF 231 253
23933885_peptide C2H2 ZF 259 281
23933885_peptide C2H2 ZF 287 309
23933885_peptide C2H2 ZF 315 337

Links

Other C2H2 ZF family TFs
Other Saccoglossus kowalevskii TFs

108 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL008696 Aedes aegypti AAEL008696 N
BGIBMGA009650 Bombyx mori BGIBMGA009650 N
Smox Drosophila melanogaster FBgn0025800 N
GA15332 Drosophila pseudoobscura FBgn0075352 N
GF20979 Drosophila ananassae FBgn0097984 N
GG17985 Drosophila erecta FBgn0110203 N
GH24864 Drosophila grimshawi FBgn0132319 N
GI14415 Drosophila mojavensis FBgn0137167 N
GL20193 Drosophila persimilis FBgn0157788 N
GM11208 Drosophila sechellia FBgn0166153 N
GD24642 Drosophila simulans FBgn0195970 N
GJ18762 Drosophila virilis FBgn0205914 N
GK24988 Drosophila willistoni FBgn0226947 N
GE17479 Drosophila yakuba FBgn0234944 N
LCUP004671 Lucilia cuprina LCUP004671 N
MDOA010892 Musca domestica MDOA010892 N