Ciclev10002297m.g (Citrus clementina)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Ciclev10002297m.g T142758_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AZF2
M01854_2.00 		Arabidopsis thaliana
NASTRNN
NNYASTN		 PBM
Weirauch et al.(2014)
pTH8258 		0.822 0.891
ZAT6
M00861_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT6 		0.803 0.935
ZAT4
M01168_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Lambert et al.(2019)
pTH11142 		0.799 0.717
ZAT9
M06817_2.00 		Arabidopsis thaliana
YTACTWHH
DDWAGTAR		 Dap-seq
OMalley et al.(2016)
At3g60580_col_a 		0.799 0.696
ZAT10
M01852_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7255 		0.796 0.870
ZAT10
M06799_2.00 		Arabidopsis thaliana
WSHHCACT
AGTGDDSW		 Dap-seq
OMalley et al.(2016)
STZ_colamp_a 		0.796 0.870
ZAT10
M06800_2.00 		Arabidopsis thaliana
YWSHNHCASTN
NASTGDNDSWR		 Dap-seq
OMalley et al.(2016)
STZ_col 		0.796 0.870
AZF1
M01860_2.00 		Arabidopsis thaliana
NWSYDNN
NNHRSWN		 PBM
Weirauch et al.(2014)
pTH7163 		0.787 0.804
AZF1
M06826_2.00 		Arabidopsis thaliana
WCACTVWCWNH
DNWGWBAGTGW		 Dap-seq
OMalley et al.(2016)
AZF1_colamp_a 		0.787 0.804
ZAT1
M01167_2.00 		Arabidopsis thaliana
NHRCTNN
NNAGYDN		 PBM
Lambert et al.(2019)
pTH10246 		0.776 0.717
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10002297m C2H2 ZF 98 120
Ciclev10002297m C2H2 ZF 155 177

Links

Other C2H2 ZF family TFs
Other Citrus clementina TFs

230 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BRADI1G25470 Brachypodium distachyon BRADI1G25470 N
F775_29547 Aegilops tauschii F775_29547 N
GRMZM2G058451 Zea mays GRMZM2G058451 N
LPERR07G15060 Leersia perrieri LPERR07G15060 N
OB07G23510 Oryza brachyantha OB07G23510 N
Pavir.Ba00731 Panicum virgatum Pavir.Ba00731 N
Pavir.J35704 Panicum virgatum Pavir.J35704 N
Sb02g035580 Sorghum bicolor Sb02g035580 N
Si030877m.g Setaria italica Si030877m.g N
Traes_2AS_FE9AC4EDD Triticum aestivum Traes_2AS_FE9AC4EDD N
Traes_2BS_7190FAD1A Triticum aestivum Traes_2BS_7190FAD1A N
Traes_2DS_B05DDA181 Triticum aestivum Traes_2DS_B05DDA181 N