Ciclev10007101m.g (Citrus clementina)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Ciclev10007101m.g T142768_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZAT9
M06817_2.00 		Arabidopsis thaliana
YTACTWHH
DDWAGTAR		 Dap-seq
OMalley et al.(2016)
At3g60580_col_a 		0.772 0.717
ZAT4
M01168_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Lambert et al.(2019)
pTH11142 		0.772 0.696
ZAT10
M01852_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7255 		0.761 0.696
ZAT10
M06799_2.00 		Arabidopsis thaliana
WSHHCACT
AGTGDDSW		 Dap-seq
OMalley et al.(2016)
STZ_colamp_a 		0.761 0.696
ZAT10
M06800_2.00 		Arabidopsis thaliana
YWSHNHCASTN
NASTGDNDSWR		 Dap-seq
OMalley et al.(2016)
STZ_col 		0.761 0.696
AZF2
M01854_2.00 		Arabidopsis thaliana
NASTRNN
NNYASTN		 PBM
Weirauch et al.(2014)
pTH8258 		0.760 0.696
ZAT6
M00861_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT6 		0.760 0.674
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10007101m C2H2 ZF 171 193
Ciclev10007101m C2H2 ZF 220 242

Links

Other C2H2 ZF family TFs
Other Citrus clementina TFs

142 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ANCDUO_13707 Ancylostoma duodenale ANCDUO_13707 N 0.000
Bm4268 Brugia malayi Bm4268 N 0.000
CGI_10022678 Crassostrea gigas CGI_10022678 N 0.000
EEL_0000200601 Elaeophora elaphi EEL_0000200601 N 0.000
ENSAMEG00000003728 Ailuropoda melanoleuca ENSAMEG00000003728 N 0.000
L3MBTL1 Canis familiaris ENSCAFG00000009291 N 0.000
L3MBTL1 Choloepus hoffmanni ENSCHOG00000005052 N 0.000
L3MBTL1 Callithrix jacchus ENSCJAG00000003964 N 0.000
ENSCSAG00000014035 Chlorocebus sabaeus ENSCSAG00000014035 N 0.000
L3mbtl1 Dipodomys ordii ENSDORG00000002707 N 0.000
L3MBTL1 Equus caballus ENSECAG00000008175 N 0.000
L3MBTL1 Erinaceus europaeus ENSEEUG00000006232 N 0.000
ENSETEG00000013916 Echinops telfairi ENSETEG00000013916 N 0.000
L3MBTL1 Homo sapiens ENSG00000185513 N 0.000
MYT1L Homo sapiens ENSG00000186487 I 0.000
L3MBTL1 Gorilla gorilla ENSGGOG00000034980 N 0.000
L3MBTL1 Microcebus murinus ENSMICG00000015115 N 0.000
MYT1L Macaca mulatta ENSMMUG00000009310 I 0.000
L3MBTL1 Monodelphis domestica ENSMODG00000003647 N 0.000
ENSMPUG00000017691 Mustela putorius furo ENSMPUG00000017691 N 0.000
L3mbtl1 Mus musculus ENSMUSG00000035576 N 0.000
ENSNLEG00000006529 Nomascus leucogenys ENSNLEG00000006529 N 0.000
L3MBTL1 Ornithorhynchus anatinus ENSOANG00000014344 N 0.000
ENSOARG00000003176 Ovis aries ENSOARG00000003176 N 0.000
L3MBTL1 Oryctolagus cuniculus ENSOCUG00000006662 N 0.000
L3MBTL1 Otolemur garnettii ENSOGAG00000014470 N 0.000
ENSP00000362227 Macaca fascicularis ENSP00000362227 N 0.000
ENSPANG00000026135 Papio anubis ENSPANG00000026135 N 0.000
L3MBTL1 Procavia capensis ENSPCAG00000013248 N 0.000
L3MBTL1 Pan troglodytes ENSPTRG00000013507 N 0.000
L3MBTL1 Pteropus vampyrus ENSPVAG00000015234 N 0.000
L3mbtl1 Rattus norvegicus ENSRNOG00000007044 N 0.000
ENSSSCG00000007365 Sus scrofa ENSSSCG00000007365 N 0.000
ENSSTOG00000011672 Ictidomys tridecemlineatus ENSSTOG00000011672 N 0.000
ENSTSYG00000014180 Tarsius syrichta ENSTSYG00000014180 N 0.000
L3MBTL1 Tursiops truncatus ENSTTRG00000012844 N 0.000
estExt_fgenesh2_pg.C_5980016 Branchiostoma floridae estExt_fgenesh2_pg.C_5980016 N 0.000
GPLIN_000814800 Globodera pallida GPLIN_000814800 N 0.000
GPLIN_001349600 Globodera pallida GPLIN_001349600 N 0.000
HPBE_0001834901 Heligmosomoides bakeri HPBE_0001834901 N 0.000
L892_g7301 Steinernema scapterisci L892_g7301 N 0.000
L898_g12863 Steinernema monticolum L898_g12863 N 0.000
maker-nMf.1.1.scaf02509-snap-gene-0.6 Meloidogyne floridensis maker-nMf.1.1.scaf02509-snap-gene-0.6 N 0.000
MESCA002178 Megaselia scalaris MESCA002178 N 0.000
nAv.1.0.1.g04361 Acanthocheilonema viteae nAv.1.0.1.g04361 N 0.000
nOo.2.0.1.g09682 Onchocerca ochengi nOo.2.0.1.g09682 N 0.000
Ocbimv22011176m.g Octopus bimaculoides Ocbimv22011176m.g N 0.000
PPAI004584 Phlebotomus papatasi PPAI004584 N 0.000
PXEA_0001827501 Protopolystoma xenopodis PXEA_0001827501 N 0.000
PXEA_0003323301 Protopolystoma xenopodis PXEA_0003323301 N 0.000
TsM_000155300 Taenia solium TsM_000155300 N 0.000
WUBG_11438 Wuchereria bancrofti WUBG_11438 N 0.000