Ciclev10019959m.g (Citrus clementina)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Ciclev10019959m.g T142781_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
JKD
M06818_2.00 		Arabidopsis thaliana
HHNWWTTTTGTCKTTTWBYD
HRVWAAAMGACAAAAWWNDD		 Dap-seq
OMalley et al.(2016)
JKD_col_a 		0.827 0.953
IDD7
M06803_2.00 		Arabidopsis thaliana
NDDTTTTGTCKTTTWBYD
HRVWAAAMGACAAAAHHN		 Dap-seq
OMalley et al.(2016)
IDD7_col_a 		0.797 0.930
IDD4
M06809_2.00 		Arabidopsis thaliana
WWTTTTGTCKTTTWSYD
HRSWAAAMGACAAAAWW		 Dap-seq
OMalley et al.(2016)
IDD4_col_a 		0.797 0.907
MGP
M06795_2.00 		Arabidopsis thaliana
HNHDWTTTTGTCKTTTWNYD
HRNWAAAMGACAAAAWHDND		 Dap-seq
OMalley et al.(2016)
MGP_col_a 		0.797 0.907
MGP
M06796_2.00 		Arabidopsis thaliana
NNDTTTTGTCKTTTWBYD
HRVWAAAMGACAAAAHNN		 Dap-seq
OMalley et al.(2016)
MGP_colamp_a 		0.797 0.907
IDD5
M06807_2.00 		Arabidopsis thaliana
DNTTTTGTCKTTTTSYD
HRSAAAAMGACAAAANH		 Dap-seq
OMalley et al.(2016)
IDD5_colamp_a 		0.792 0.930
IDD5
M06808_2.00 		Arabidopsis thaliana
WTTTTGTCKTTTWSYD
HRSWAAAMGACAAAAW		 Dap-seq
OMalley et al.(2016)
IDD5_col 		0.792 0.930
AT1G14580
M06797_2.00 		Arabidopsis thaliana
NNNWWTTTTGTCKTTTWSYD
HRSWAAAMGACAAAAWWNNN		 Dap-seq
OMalley et al.(2016)
At1g14580_col_a 		0.792 0.884
AT1G14580
M06798_2.00 		Arabidopsis thaliana
NNTTTTGTCKTTTWSYD
HRSWAAAMGACAAAANN		 Dap-seq
OMalley et al.(2016)
At1g14580_colamp_a 		0.792 0.884
NUC
M06822_2.00 		Arabidopsis thaliana
NNNNNTTTTGTCKTYTWBYD
HRVWARAMGACAAAANNNNN		 Dap-seq
OMalley et al.(2016)
NUC_col_a 		0.774 0.884
NUC
M06823_2.00 		Arabidopsis thaliana
NDTTTTGTCGTYTWNYD
HRNWARACGACAAAAHN		 Dap-seq
OMalley et al.(2016)
NUC_colamp_a 		0.774 0.884
IDD1
M06824_2.00 		Arabidopsis thaliana
DNTTTTGTCKTTTWBYD
HRVWAAAMGACAAAANH		 Dap-seq
OMalley et al.(2016)
At5g66730_colamp_a 		0.764 0.907
IDD1
M06825_2.00 		Arabidopsis thaliana
WDTTTTGTCKTTTWNYD
HRNWAAAMGACAAAAHW		 Dap-seq
OMalley et al.(2016)
At5g66730_col 		0.764 0.907
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10019959m C2H2 ZF 158 179
Ciclev10019959m C2H2 ZF 178 204

Links

Other C2H2 ZF family TFs
Other Citrus clementina TFs

641 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CERSUDRAFT_53511 Ceriporiopsis subvermispora CERSUDRAFT_53511 N 0.000
CY34DRAFT_65016 Suillus luteus CY34DRAFT_65016 N 0.000
DICSQDRAFT_25834 Dichomitus squalens DICSQDRAFT_25834 N 0.000
fgenesh1_pg.C_scaffold_7000290 Phanerochaete chrysosporium fgenesh1_pg.C_scaffold_7000290 N 0.000
FIBRA_00221 Fibroporia radiculosa FIBRA_00221 N 0.000
FOMPIDRAFT_1106900 Fomitopsis pinicola FOMPIDRAFT_1106900 N 0.000
GLOTRDRAFT_11198 Gloeophyllum trabeum GLOTRDRAFT_11198 N 0.000
GLOTRDRAFT_132317 Gloeophyllum trabeum GLOTRDRAFT_132317 N 0.000
gw1.12.560.1 Heterobasidion annosum gw1.12.560.1 N 0.000
HETIRDRAFT_163823 Heterobasidion irregulare HETIRDRAFT_163823 N 0.000
HYDPIDRAFT_72317 Hydnomerulius pinastri HYDPIDRAFT_72317 N 0.000
JAAARDRAFT_128575 Jaapia argillacea JAAARDRAFT_128575 N 0.000
PHLGIDRAFT_425290 Phlebiopsis gigantea PHLGIDRAFT_425290 N 0.000
PILCRDRAFT_133920 Piloderma croceum PILCRDRAFT_133920 N 0.000
PILCRDRAFT_810920 Piloderma croceum PILCRDRAFT_810920 N 0.000
PISMIDRAFT_95946 Pisolithus microcarpus PISMIDRAFT_95946 N 0.000
SERLA73DRAFT_149914 Serpula lacrymans SERLA73DRAFT_149914 N 0.000