gene13960-v1.0-hybrid (Fragaria vesca)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 gene13960-v1.0-hybrid T142959_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT5G04390
M01857_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Weirauch et al.(2014)
pTH7158 		0.795 0.804
AT5G04390
M06819_2.00 		Arabidopsis thaliana
HHHHWHCACTN
NAGTGDWDDDD		 Dap-seq
OMalley et al.(2016)
At5g04390_col200_a 		0.795 0.804
AT5G03510
M00860_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT14 		0.795 0.761
ZAT7
M01855_2.00 		Arabidopsis thaliana
NVDBRCACTNNNN
NNNNAGTGYVHBN		 PBM
Weirauch et al.(2014)
pTH7540 		0.776 0.826
AT3G46070
M06813_2.00 		Arabidopsis thaliana
HYHHYHTCACTYHHH
DDDRAGTGADRDDRD		 Dap-seq
OMalley et al.(2016)
AT3G46070_col_a 		0.768 0.826
AT3G53600
M01856_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7188 		0.762 0.761
AT3G53600
M00858_2.00 		Arabidopsis thaliana
NNNNRSWN
NWSYNNNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT18 		0.762 0.761
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna13960.1-v1.0-hybrid C2H2 ZF 43 65
mrna13960.1-v1.0-hybrid C2H2 ZF 95 117

Links

Other C2H2 ZF family TFs
Other Fragaria vesca TFs

370 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BBA_03694 Beauveria bassiana BBA_03694 I 0.000
CANTEDRAFT_114387 Candida tenuis CANTEDRAFT_114387 I 0.000
CaO19.13521 Candida albicans CaO19.13521 N 0.000
CaO19.6102 Candida albicans CaO19.6102 N 0.000
CCM_09413 Cordyceps militaris CCM_09413 I 0.000
CD36_00090 Candida dubliniensis CD36_00090 N 0.000
CLUG_03450 Candida lusitaniae CLUG_03450 N 0.000
CLUG_03450 Clavispora lusitaniae CLUG_03450 N 0.000
CORT_0B10610 Candida orthopsilosis CORT_0B10610 N 0.000
CPAG_01343 Candida parapsilosis CPAG_01343 N 0.000
CTRG_04281 Candida tropicalis CTRG_04281 I 0.000
estExt_fgenesh1_pg.C_chr_7.10008 Pichia stipitis estExt_fgenesh1_pg.C_chr_7.10008 N 0.000
estExt_Genewise1.C_71204 Cryphonectria parasitica estExt_Genewise1.C_71204 I 0.000
GNLVRS01_PISO0A10934g Millerozyma farinosa GNLVRS01_PISO0A10934g I 0.000
GNLVRS01_PISO0B11001g Millerozyma farinosa GNLVRS01_PISO0B11001g I 0.000
LELG_01449 Lodderomyces elongisporus LELG_01449 N 0.000
PGUG_01090 Meyerozyma guilliermondii PGUG_01090 N 0.000
PICST_68235 Scheffersomyces stipitis PICST_68235 N 0.000
SPAPADRAFT_130700 Spathaspora passalidarum SPAPADRAFT_130700 I 0.000