Gorai.001G175400 (Gossypium raimondii)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Gorai.001G175400 T142990_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZAT4
M01168_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Lambert et al.(2019)
pTH11142 		0.821 0.913
ZAT9
M06817_2.00 		Arabidopsis thaliana
YTACTWHH
DDWAGTAR		 Dap-seq
OMalley et al.(2016)
At3g60580_col_a 		0.821 0.913
ZAT1
M01167_2.00 		Arabidopsis thaliana
NHRCTNN
NNAGYDN		 PBM
Lambert et al.(2019)
pTH10246 		0.796 0.848
AZF2
M01854_2.00 		Arabidopsis thaliana
NASTRNN
NNYASTN		 PBM
Weirauch et al.(2014)
pTH8258 		0.793 0.717
ZAT10
M01852_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7255 		0.770 0.696
ZAT10
M06799_2.00 		Arabidopsis thaliana
WSHHCACT
AGTGDDSW		 Dap-seq
OMalley et al.(2016)
STZ_colamp_a 		0.770 0.696
ZAT10
M06800_2.00 		Arabidopsis thaliana
YWSHNHCASTN
NASTGDNDSWR		 Dap-seq
OMalley et al.(2016)
STZ_col 		0.770 0.696
ZAT6
M00861_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT6 		0.769 0.674
AZF1
M01860_2.00 		Arabidopsis thaliana
NWSYDNN
NNHRSWN		 PBM
Weirauch et al.(2014)
pTH7163 		0.760 0.696
AZF1
M06826_2.00 		Arabidopsis thaliana
WCACTVWCWNH
DNWGWBAGTGW		 Dap-seq
OMalley et al.(2016)
AZF1_colamp_a 		0.760 0.696
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.001G175400.1 C2H2 ZF 240 262
Gorai.001G175400.1 C2H2 ZF 296 318

Links

Other C2H2 ZF family TFs
Other Gossypium raimondii TFs

216 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL002343 Aedes aegypti AAEL002343 N 0.000
AAEL014740 Aedes aegypti AAEL014740 N 0.000
AALB007750 Anopheles albimanus AALB007750 N 0.000
Aan_R007988 Calypte anna Aan_R007988 N 0.000
AARA001122 Anopheles arabiensis AARA001122 N 0.000
AATE003730 Anopheles atroparvus AATE003730 N 0.000
ACEP14936 Atta cephalotes ACEP14936 N 0.000
ACOM029080 Anopheles coluzzii ACOM029080 N 0.000
ACUA021406 Anopheles culicifacies ACUA021406 N 0.000
ACYPI001635 Acyrthosiphon pisum ACYPI001635 N 0.000
ADAC003908 Anopheles darlingi ADAC003908 N 0.000
ADIR001051 Anopheles dirus ADIR001051 N 0.000
AEPI007278 Anopheles epiroticus AEPI007278 N 0.000
AFAF017713 Anopheles farauti AFAF017713 N 0.000
Afo_R000495 Aptenodytes forsteri Afo_R000495 N 0.000
AFUN004699 Anopheles funestus AFUN004699 N 0.000
AGAP000056 Anopheles gambiae AGAP000056 N 0.000
Alligator_sinensis_CCG000862.1 Alligator sinensis Alligator_sinensis_CCG000862.1 N 0.000
AMAM000698 Anopheles maculatus AMAM000698 N 0.000
AMEC022213 Anopheles melas AMEC022213 N 0.000
AMEM001368 Anopheles merus AMEM001368 N 0.000
AMIN002121 Anopheles minimus AMIN002121 N 0.000
AQUA005712 Anopheles quadriannulatus AQUA005712 N 0.000
ASIS013948 Anopheles sinensis ASIS013948 N 0.000
ASTEI06194 Anopheles stephensi ASTEI06194 N 0.000
BGLB001139 Biomphalaria glabrata BGLB001139 N 0.000
Brh_R013374 Buceros rhinoceros Brh_R013374 N 0.000
Cflo_02462--XP_391937.2_APIME Camponotus floridanus Cflo_02462--XP_391937.2_APIME N 0.000
CGI_10014877 Crassostrea gigas CGI_10014877 N 0.000
CLEC007310 Cimex lectularius CLEC007310 N 0.000
Cmyd_10005570 Chelonia mydas Cmyd_10005570 N 0.000
CPIJ006378 Culex quinquefasciatus CPIJ006378 N 0.000
CpipJ_CPIJ006378 Culex pipiens CpipJ_CPIJ006378 N 0.000
DAPPUDRAFT_59022 Daphnia pulex DAPPUDRAFT_59022 N 0.000
ENSAMEG00000018716 Ailuropoda melanoleuca ENSAMEG00000018716 N 0.000
ENSAMXG00000020327 Astyanax mexicanus ENSAMXG00000020327 N 0.000
ENSAPLG00000000714 Anas platyrhynchos ENSAPLG00000000714 N 0.000
NPAS1 Bos taurus ENSBTAG00000015576 N 0.000
NPAS1 Canis familiaris ENSCAFG00000032405 N 0.000
NPAS3 Choloepus hoffmanni ENSCHOG00000013756 N 0.000
NPAS3 Callithrix jacchus ENSCJAG00000005437 N 0.000
NPAS1 Callithrix jacchus ENSCJAG00000011666 N 0.000
NPAS3 Cavia porcellus ENSCPOG00000006976 N 0.000
NPAS1 Cavia porcellus ENSCPOG00000023069 N 0.000
ENSCSAG00000003006 Chlorocebus sabaeus ENSCSAG00000003006 N 0.000
npas1 Danio rerio ENSDARG00000015876 N 0.000
NPAS1 Dasypus novemcinctus ENSDNOG00000035321 N 0.000
Npas3 Dipodomys ordii ENSDORG00000000860 N 0.000
ENSECAG00000004630 Equus caballus ENSECAG00000004630 N 0.000
NPAS3 Erinaceus europaeus ENSEEUG00000006528 N 0.000
NPAS3 Echinops telfairi ENSETEG00000016603 N 0.000
NPAS1 Felis catus ENSFCAG00000004833 N 0.000
NPAS1 Homo sapiens ENSG00000130751 N 0.000
NPAS3 Homo sapiens ENSG00000151322 N 0.000
npas1 Gasterosteus aculeatus ENSGACG00000009494 N 0.000
NPAS3 Gallus gallus ENSGALG00000029022 N 0.000
NPAS1 Gorilla gorilla ENSGGOG00000013398 N 0.000
NPAS3 Gorilla gorilla ENSGGOG00000022941 N 0.000
ENSGMOG00000016149 Gadus morhua ENSGMOG00000016149 N 0.000
ENSLACG00000001145 Latimeria chalumnae ENSLACG00000001145 N 0.000
NPAS3 Loxodonta africana ENSLAFG00000007169 N 0.000
ENSLOCG00000009512 Lepisosteus oculatus ENSLOCG00000009512 N 0.000
ENSLOCG00000014899 Lepisosteus oculatus ENSLOCG00000014899 N 0.000
ENSMEUG00000000606 Macropus eugenii ENSMEUG00000000606 N 0.000
ENSMEUG00000012966 Macropus eugenii ENSMEUG00000012966 N 0.000
ENSMGAG00000016559 Meleagris gallopavo ENSMGAG00000016559 N 0.000
ENSMICG00000000605 Microcebus murinus ENSMICG00000000605 N 0.000
NPAS1 Microcebus murinus ENSMICG00000006346 N 0.000
NPAS1 Macaca mulatta ENSMMUG00000011330 N 0.000
NPAS3 Macaca mulatta ENSMMUG00000014839 N 0.000
NPAS1 Monodelphis domestica ENSMODG00000009053 N 0.000
ENSMODG00000024103 Monodelphis domestica ENSMODG00000024103 N 0.000
ENSMPUG00000001046 Mustela putorius furo ENSMPUG00000001046 N 0.000
ENSMPUG00000005118 Mustela putorius furo ENSMPUG00000005118 N 0.000
Npas1 Mus musculus ENSMUSG00000001988 N 0.000
Npas3 Mus musculus ENSMUSG00000021010 N 0.000
ENSNLEG00000002946 Nomascus leucogenys ENSNLEG00000002946 N 0.000
ENSNLEG00000003239 Nomascus leucogenys ENSNLEG00000003239 N 0.000
ENSOANG00000014043 Ornithorhynchus anatinus ENSOANG00000014043 N 0.000
ENSOARG00000010869 Ovis aries ENSOARG00000010869 N 0.000
NPAS1 Otolemur garnettii ENSOGAG00000012829 N 0.000
NPAS3 Otolemur garnettii ENSOGAG00000014886 N 0.000
NPAS3 Ochotona princeps ENSOPRG00000008184 N 0.000
NPAS1 Ochotona princeps ENSOPRG00000014860 N 0.000
ENSORLG00000006931 Oryzias latipes ENSORLG00000006931 N 0.000
NPAS3 Oryzias latipes ENSORLG00000018065 N 0.000
ENSP00000348460 Macaca fascicularis ENSP00000348460 N 0.000
ENSP00000348460-D1 Bos grunniens ENSP00000348460-D1 N 0.000
ENSP00000405290 Macaca fascicularis ENSP00000405290 N 0.000
ENSPANG00000014704 Papio anubis ENSPANG00000014704 N 0.000
ENSPCAG00000000784 Procavia capensis ENSPCAG00000000784 N 0.000
NPAS3 Procavia capensis ENSPCAG00000007391 N 0.000
ENSPFOG00000008940 Poecilia formosa ENSPFOG00000008940 N 0.000
ENSPMAG00000007632 Petromyzon marinus ENSPMAG00000007632 N 0.000
ENSPPYG00000010165 Pongo abelii ENSPPYG00000010165 N 0.000
ENSPSIG00000017052 Pelodiscus sinensis ENSPSIG00000017052 N 0.000
NPAS3 Pan troglodytes ENSPTRG00000006249 N 0.000
NPAS1 Pan troglodytes ENSPTRG00000011199 N 0.000
Npas1 Rattus norvegicus ENSRNOG00000015376 N 0.000
NPAS3 Sorex araneus ENSSARG00000003164 N 0.000
ENSSARG00000014127 Sorex araneus ENSSARG00000014127 N 0.000
ENSSHAG00000011475 Sarcophilus harrisii ENSSHAG00000011475 N 0.000
NPAS1 Sus scrofa ENSSSCG00000003108 N 0.000
ENSSSCG00000024473 Sus scrofa ENSSSCG00000024473 N 0.000
ENSSTOG00000003396 Ictidomys tridecemlineatus ENSSTOG00000003396 N 0.000
ENSSTOG00000014736 Ictidomys tridecemlineatus ENSSTOG00000014736 N 0.000
NPAS3 Tupaia belangeri ENSTBEG00000016041 N 0.000
ENSTGUG00000011911 Taeniopygia guttata ENSTGUG00000011911 N 0.000
npas1 Takifugu rubripes ENSTRUG00000012318 N 0.000
NPAS3 Tursiops truncatus ENSTTRG00000003266 N 0.000
NPAS1 Tursiops truncatus ENSTTRG00000011416 N 0.000
NPAS3 Vicugna pacos ENSVPAG00000001108 N 0.000
ENSXMAG00000004213 Xiphophorus maculatus ENSXMAG00000004213 N 0.000
trh Drosophila sechellia FBgn0025046 N 0.000
GA19928 Drosophila pseudoobscura FBgn0079924 N 0.000
GF24890 Drosophila ananassae FBgn0101882 N 0.000
GG14662 Drosophila erecta FBgn0106918 N 0.000
GH15456 Drosophila grimshawi FBgn0122928 N 0.000
GH23748 Drosophila grimshawi FBgn0131205 N 0.000
GI16736 Drosophila mojavensis FBgn0139484 N 0.000
GD25707 Drosophila simulans FBgn0196992 N 0.000
GJ12482 Drosophila virilis FBgn0199724 N 0.000
GK20151 Drosophila willistoni FBgn0222148 N 0.000
GE21022 Drosophila yakuba FBgn0238304 N 0.000
trh Drosophila melanogaster FBgn0262139 N 0.000
GB52114 Apis mellifera GB52114 N 0.000
Gfo_R012966 Geospiza fortis Gfo_R012966 N 0.000
gw.84.113.1 Branchiostoma floridae gw.84.113.1 N 0.000
HelroG63031 Helobdella robusta HelroG63031 N 0.000
Hsal_10736--XP_391937.2_APIME Harpegnathos saltator Hsal_10736--XP_391937.2_APIME N 0.000
ISCW018625 Ixodes scapularis ISCW018625 N 0.000
LCUP010821 Lucilia cuprina LCUP010821 N 0.000
LDEC011477 Leptinotarsa decemlineata LDEC011477 N 0.000
LotgiG127403 Lottia gigantea LotgiG127403 N 0.000
MCINX015160 Melitaea cinxia MCINX015160 N 0.000
MDOA009035 Musca domestica MDOA009035 N 0.000
NEMVEDRAFT_v1g96877 Nematostella vectensis NEMVEDRAFT_v1g96877 N 0.000
NV13641 Nasonia vitripennis NV13641 N 0.000
NV16594 Nasonia vitripennis NV16594 I 0.000
Ocbimv22029779m.g Octopus bimaculoides Ocbimv22029779m.g N 0.000
PHUM613040 Pediculus humanus PHUM613040 N 0.000
Pvit_04747 Pogona vitticeps Pvit_04747 N 0.000
Sakowv30006415m.g Saccoglossus kowalevskii Sakowv30006415m.g N 0.000
SMAR015279 Strigamia maritima SMAR015279 N 0.000
SPU_014249 Strongylocentrotus purpuratus SPU_014249 N 0.000
Tal_R006980 Tyto alba Tal_R006980 N 0.000
TC001448 Tribolium castaneum TC001448 N 0.000
tetur01g16040 Tetranychus urticae tetur01g16040 N 0.000
npas3 Xenopus tropicalis XB-GENE-999791 N 0.000