Gorai.010G202400 (Gossypium raimondii)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Gorai.010G202400 T143074_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT5G03510
M00860_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT14 		0.800 0.804
AT5G04390
M01857_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Weirauch et al.(2014)
pTH7158 		0.795 0.804
AT5G04390
M06819_2.00 		Arabidopsis thaliana
HHHHWHCACTN
NAGTGDWDDDD		 Dap-seq
OMalley et al.(2016)
At5g04390_col200_a 		0.795 0.804
ZAT4
M01168_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Lambert et al.(2019)
pTH11142 		0.774 0.696
ZAT9
M06817_2.00 		Arabidopsis thaliana
YTACTWHH
DDWAGTAR		 Dap-seq
OMalley et al.(2016)
At3g60580_col_a 		0.774 0.674
AZF2
M01854_2.00 		Arabidopsis thaliana
NASTRNN
NNYASTN		 PBM
Weirauch et al.(2014)
pTH8258 		0.773 0.652
ZAT7
M01855_2.00 		Arabidopsis thaliana
NVDBRCACTNNNN
NNNNAGTGYVHBN		 PBM
Weirauch et al.(2014)
pTH7540 		0.771 0.761
AT3G46070
M06813_2.00 		Arabidopsis thaliana
HYHHYHTCACTYHHH
DDDRAGTGADRDDRD		 Dap-seq
OMalley et al.(2016)
AT3G46070_col_a 		0.763 0.804
AT3G53600
M01856_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7188 		0.762 0.761
AT3G53600
M00858_2.00 		Arabidopsis thaliana
NNNNRSWN
NWSYNNNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT18 		0.762 0.761
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.010G202400.1 C2H2 ZF 44 66
Gorai.010G202400.1 C2H2 ZF 90 112

Links

Other C2H2 ZF family TFs
Other Gossypium raimondii TFs

466 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL003932 Aedes aegypti AAEL003932 N 0.000
AALB002527 Anopheles albimanus AALB002527 N 0.000
AARA006596 Anopheles arabiensis AARA006596 N 0.000
AATE012097 Anopheles atroparvus AATE012097 N 0.000
ACEP16657 Atta cephalotes ACEP16657 N 0.000
ACOM028538 Anopheles coluzzii ACOM028538 N 0.000
ADAC002056 Anopheles darlingi ADAC002056 N 0.000
ADIR010659 Anopheles dirus ADIR010659 N 0.000
AEPI000347 Anopheles epiroticus AEPI000347 N 0.000
AFAF005531 Anopheles farauti AFAF005531 N 0.000
AGAP003537 Anopheles gambiae AGAP003537 I 0.000
AMAM005072 Anopheles maculatus AMAM005072 N 0.000
AMEC020799 Anopheles melas AMEC020799 N 0.000
AMEM015214 Anopheles merus AMEM015214 N 0.000
AQUA001676 Anopheles quadriannulatus AQUA001676 N 0.000
ASTEI09330 Anopheles stephensi ASTEI09330 N 0.000
BGIBMGA007530 Bombyx mori BGIBMGA007530 N 0.000
Cflo_04979--XP_394394.3_APIME Camponotus floridanus Cflo_04979--XP_394394.3_APIME N 0.000
CPIJ009647 Culex quinquefasciatus CPIJ009647 N 0.000
CpipJ_CPIJ009647 Culex pipiens CpipJ_CPIJ009647 N 0.000
ttk Drosophila melanogaster FBgn0003870 D 0.000
ttk Drosophila pseudoobscura FBgn0075017 I 0.000
GF22979 Drosophila ananassae FBgn0099973 N 0.000
GH18647 Drosophila grimshawi FBgn0126114 N 0.000
GI23126 Drosophila mojavensis FBgn0145853 N 0.000
GM16442 Drosophila sechellia FBgn0171357 N 0.000
GJ23100 Drosophila virilis FBgn0210202 N 0.000
GB47057 Apis mellifera GB47057 N 0.000
HMEL015189 Heliconius melpomene HMEL015189 N 0.000
Hsal_07865--XP_394394.3_APIME Harpegnathos saltator Hsal_07865--XP_394394.3_APIME N 0.000
KGM_19333 Danaus plexippus KGM_19333 N 0.000
LDEC015482 Leptinotarsa decemlineata LDEC015482 N 0.000
MCINX010146 Melitaea cinxia MCINX010146 N 0.000
MDOA011489 Musca domestica MDOA011489 N 0.000
MESCA008988 Megaselia scalaris MESCA008988 N 0.000
NV13850 Nasonia vitripennis NV13850 N 0.000
PPAI003518 Phlebotomus papatasi PPAI003518 N 0.000
TC013842 Tribolium castaneum TC013842 N 0.000
YQE_06302 Dendroctonus ponderosae YQE_06302 N 0.000