Pavir.Bb02239 (Panicum virgatum)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Pavir.Bb02239 T143321_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZFP5
M01851_2.00 		Arabidopsis thaliana
DSWTNNNN
NNNNAWSH		 PBM
Weirauch et al.(2014)
pTH7539 		0.766 0.696
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Bb02239.1.p C2H2 ZF 114 136

Links

Other C2H2 ZF family TFs
Other Panicum virgatum TFs

94 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
A1O3_10179 Capronia epimyces A1O3_10179 N 0.000
BAUCODRAFT_122462 Baudoinia compniacensis BAUCODRAFT_122462 I 0.000
DOTSEDRAFT_166261 Dothistroma septosporum DOTSEDRAFT_166261 N 0.000
PV06_03533 Exophiala oligosperma PV06_03533 N 0.000
PV08_05947 Exophiala spinifera PV08_05947 I 0.000
SAPIO_CDS2526 Scedosporium apiospermum SAPIO_CDS2526 N 0.000
TRIVIDRAFT_44566 Trichoderma virens TRIVIDRAFT_44566 N 0.000
Z518_01782 Rhinocladiella mackenziei Z518_01782 N 0.000