Pavir.Fb01741 (Panicum virgatum)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Pavir.Fb01741 T143355_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SGR5
M06805_2.00 		Arabidopsis thaliana
WTTTTGTCTTWTHYD
HRDAWAAGACAAAAW		 Dap-seq
OMalley et al.(2016)
SGR5_col_a 		0.759 0.864
SGR5
M06806_2.00 		Arabidopsis thaliana
WTTTGTCTYWWHBNN
NNVDWWRAGACAAAW		 Dap-seq
OMalley et al.(2016)
SGR5_colamp_a 		0.759 0.864
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Fb01741.2.p C2H2 ZF 145 172
Pavir.Fb01741.2.p C2H2 ZF 166 192

Links

Other C2H2 ZF family TFs
Other Panicum virgatum TFs

96 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Sakowv30034954m.g Saccoglossus kowalevskii Sakowv30034954m.g N
Sakowv30034955m.g Saccoglossus kowalevskii Sakowv30034955m.g N
Sakowv30034956m.g Saccoglossus kowalevskii Sakowv30034956m.g N
Sakowv30034957m.g Saccoglossus kowalevskii Sakowv30034957m.g N
Sakowv30034959m.g Saccoglossus kowalevskii Sakowv30034959m.g N
Sakowv30034960m.g Saccoglossus kowalevskii Sakowv30034960m.g N
Sakowv30034963m.g Saccoglossus kowalevskii Sakowv30034963m.g N
Sakowv30034965m.g Saccoglossus kowalevskii Sakowv30034965m.g N
Sakowv30034966m.g Saccoglossus kowalevskii Sakowv30034966m.g N
Sakowv30036994m.g Saccoglossus kowalevskii Sakowv30036994m.g N
Sakowv30036995m.g Saccoglossus kowalevskii Sakowv30036995m.g N
Sakowv30036996m.g Saccoglossus kowalevskii Sakowv30036996m.g N
Sakowv30036997m.g Saccoglossus kowalevskii Sakowv30036997m.g N
Sakowv30036999m.g Saccoglossus kowalevskii Sakowv30036999m.g N
Sakowv30037000m.g Saccoglossus kowalevskii Sakowv30037000m.g N
Sakowv30037002m.g Saccoglossus kowalevskii Sakowv30037002m.g N
Sakowv30037003m.g Saccoglossus kowalevskii Sakowv30037003m.g N
Sakowv30037004m.g Saccoglossus kowalevskii Sakowv30037004m.g I
Sakowv30037005m.g Saccoglossus kowalevskii Sakowv30037005m.g N
Sakowv30037006m.g Saccoglossus kowalevskii Sakowv30037006m.g N
Sakowv30037007m.g Saccoglossus kowalevskii Sakowv30037007m.g I
Sakowv30037008m.g Saccoglossus kowalevskii Sakowv30037008m.g N
Sakowv30037009m.g Saccoglossus kowalevskii Sakowv30037009m.g N
Sakowv30037010m.g Saccoglossus kowalevskii Sakowv30037010m.g N
Sakowv30037015m.g Saccoglossus kowalevskii Sakowv30037015m.g I
Sakowv30037024m.g Saccoglossus kowalevskii Sakowv30037024m.g N
Sakowv30037025m.g Saccoglossus kowalevskii Sakowv30037025m.g N
Sakowv30037033m.g Saccoglossus kowalevskii Sakowv30037033m.g N
Sakowv30037034m.g Saccoglossus kowalevskii Sakowv30037034m.g N
Sakowv30037039m.g Saccoglossus kowalevskii Sakowv30037039m.g I
Sakowv30037045m.g Saccoglossus kowalevskii Sakowv30037045m.g I
Sakowv30037046m.g Saccoglossus kowalevskii Sakowv30037046m.g N
Sakowv30037050m.g Saccoglossus kowalevskii Sakowv30037050m.g I
Sakowv30037051m.g Saccoglossus kowalevskii Sakowv30037051m.g N
Sakowv30037056m.g Saccoglossus kowalevskii Sakowv30037056m.g N