Scas_Contig709.32 (Saccharomyces castellii)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Scas_Contig709.32 T144971_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MSN4
M00032_2.00 		Saccharomyces cerevisiae
NYCCCYNN
NNRGGGRN		 PBM
Badis et al.(2008)
MSN4_2121 		0.785 0.826
MSN4
M07462_2.00 		Saccharomyces cerevisiae
CCCCT
AGGGG		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0342.1 		0.785 0.826
MSN4
M08533_2.00 		Saccharomyces cerevisiae
CCCCT
AGGGG		 Misc
DeBoer et al.(2011)
YKL062W_518 		0.785 0.826
CaO19.4752
M01035_2.00 		Candida albicans
VCCCCYDNNN
NNNHRGGGGB		 PBM
Siggers et al.(2014)
Msn4_orf19.4752Calb 		0.781 0.761
KLLA0_F26961g
M01039_2.00 		Kluyveromyces lactis
CYCCYTD
HARGGRG		 PBM
Siggers et al.(2014)
KLLA0F29691gKlac 		0.761 0.783
MSN2
M00036_2.00 		Saccharomyces cerevisiae
NVCCCCTK
MAGGGGBN		 PBM
Badis et al.(2008)
MSN2_2101 		0.761 0.783
MSN2
M07466_2.00 		Saccharomyces cerevisiae
CCCCY
RGGGG		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0341.1 		0.761 0.783
MSN2
M08538_2.00 		Saccharomyces cerevisiae
NHYCCKN
NMGGRDN		 Misc
DeBoer et al.(2011)
YMR037C_1380 		0.761 0.783
MSN2
M10399_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$MSN2_Q4 		0.761 0.783
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Scas_Contig709.32 C2H2 ZF 765 788
Scas_Contig709.32 C2H2 ZF 794 816

Links

Other C2H2 ZF family TFs
Other Saccharomyces castellii TFs

55 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BRADI1G76690 Brachypodium distachyon BRADI1G76690 N
BRADI3G31890 Brachypodium distachyon BRADI3G31890 N
GRMZM2G353553 Zea mays GRMZM2G353553 N
GRMZM2G428184 Zea mays GRMZM2G428184 N
GSMUA_Achr5G20200_001 Musa acuminata GSMUA_Achr5G20200_001 N
LPERR10G12670 Leersia perrieri LPERR10G12670 N
MLOC_10725 Hordeum vulgare MLOC_10725 N
MLOC_66865 Hordeum vulgare MLOC_66865 N
OB10G23730 Oryza brachyantha OB10G23730 N
OLONG_016151 Oryza longistaminata OLONG_016151 N
OPUNC10G15060 Oryza punctata OPUNC10G15060 N
OS10G0531900 Oryza sativa OS10G0531900 N
Pavir.Ia02926 Panicum virgatum Pavir.Ia02926 N
Pavir.Ib00162 Panicum virgatum Pavir.Ib00162 N
Pavir.J19159 Panicum virgatum Pavir.J19159 N
Pavir.J22781 Panicum virgatum Pavir.J22781 N
Pavir.J29906 Panicum virgatum Pavir.J29906 N
Sb01g030770 Sorghum bicolor Sb01g030770 N
Sb01g048710 Sorghum bicolor Sb01g048710 N
Si035841m.g Setaria italica Si035841m.g N
Si039566m.g Setaria italica Si039566m.g N
Traes_1AL_2AC682D6D Triticum aestivum Traes_1AL_2AC682D6D N
TRIUR3_15472 Triticum urartu TRIUR3_15472 N