znf238.2.L (Xenopus laevis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 XB-GENE-1219070 T145394_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZBTB18
M02916_2.00 		Homo sapiens
VMACATCTGGAWN
NWTCCAGATGTKB		 SELEX
Jolma et al.(2013)
ZNF238_1 		0.768 0.901
ZBTB18
M02917_2.00 		Homo sapiens
NMACATCTGGMHN
NDKCCAGATGTKN		 SELEX
Jolma et al.(2013)
ZNF238_2 		0.768 0.901
ZBTB18
M04585_2.00 		Homo sapiens
NMACATCTGGMHN
NDKCCAGATGTKN		 SELEX
Yin et al.(2017)
ZBTB18_eDBD_HT-SELEX 		0.768 0.901
ZBTB18
M08350_2.00 		Homo sapiens
MRCAKCTGG
CCAGMTGYK		 ChIP-seq
Schmitges et al.(2016)
Q99592_2-4.RCADE 		0.768 0.901
ZBTB18
M08257_2.00 		Homo sapiens
NMGCAGCTGCKB
VMGCAGCTGCKN		 ChIP-seq
Najafabadi et al.(2015b)
ZNF238 		0.768 0.901
ZBTB18
M08928_2.00 		Homo sapiens
VMRCAKCTGGV
BCCAGMTGYKB		 Misc
Kulakovskiy et al.(2013)
ZBT18_HUMAN.H11MO.0.C 		0.768 0.901
ZBTB18
M10282_2.00 		Homo sapiens
NNMACATCTGGM
KCCAGATGTKNN		 Transfac
Matys et al.(2006)
V$RP58_01 		0.768 0.901
ZBTB18
M10283_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RP58_Q3 		0.768 0.901
ZBTB18
M04586_2.00 		Homo sapiens
NMACATCTGBHNN
NNDVCAGATGTKN		 SELEX
Yin et al.(2017)
ZBTB18_eDBD_Methyl-HT-SELEX 		0.768 0.901
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AAH46572 C2H2 ZF 373 395
AAH46572 C2H2 ZF 414 435
AAH46572 C2H2 ZF 441 463
AAH46572 C2H2 ZF 469 492

Links

Other C2H2 ZF family TFs
Other Xenopus laevis TFs

78 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ALUE_0001231901 Ascaris lumbricoides ALUE_0001231901 N 0.000
ASIM_0000112501 Anisakis simplex ASIM_0000112501 N 0.000
ASIM_0000209101 Anisakis simplex ASIM_0000209101 N 0.000
ASU_00847 Ascaris suum ASU_00847 N 0.000
Bm13719 Brugia malayi Bm13719 N 0.000
BTMF_0001041101 Brugia timori BTMF_0001041101 N 0.000
DME_0000929001 Dracunculus medinensis DME_0000929001 N 0.000
EEL_0000571901 Elaeophora elaphi EEL_0000571901 N 0.000
EVEC_0000342601 Enterobius vermicularis EVEC_0000342601 N 0.000
GPUH_0002186101 Gongylonema pulchrum GPUH_0002186101 N 0.000
nAv.1.0.1.g04098 Acanthocheilonema viteae nAv.1.0.1.g04098 N 0.000
nDi.2.2.2.g05973 Dirofilaria immitis nDi.2.2.2.g05973 N 0.000
nLs.2.1.2.g03265 Litomosoides sigmodontis nLs.2.1.2.g03265 N 0.000
nOo.2.0.1.g08019 Onchocerca ochengi nOo.2.0.1.g08019 N 0.000
OFLC_0000483701 Onchocerca flexuosa OFLC_0000483701 N 0.000
SMUV_0000490901 Syphacia muris SMUV_0000490901 N 0.000
TCNE_0001348801 Toxocara canis TCNE_0001348801 N 0.000
WBGene00244804 Onchocerca volvulus WBGene00244804 N 0.000