snai2.S (Xenopus laevis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 XB-GENE-865699 T145616_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SNAI2
M00221_2.00 		Homo sapiens
HACYTGH
DCARGTD		 PBM
Barrera et al.(2016)
SNAI2_REF 		0.825 0.974
SNAI2
M02873_2.00 		Homo sapiens
VCACCTGYN
NRCAGGTGB		 SELEX
Jolma et al.(2013)
SNAI2_1 		0.816 0.965
SNAI2
M04392_2.00 		Homo sapiens
YGCACCTGYY
RRCAGGTGCR		 SELEX
Yin et al.(2017)
SNAI2_eDBD_HT-SELEX 		0.825 0.974
SNAI2
M04394_2.00 		Homo sapiens
YRCACCTGYY
RRCAGGTGYR		 SELEX
Yin et al.(2017)
SNAI2_FL_HT-SELEX 		0.825 0.974
SNAI2
M08853_2.00 		Homo sapiens
NVCACCTGYY
RRCAGGTGBN		 Misc
Kulakovskiy et al.(2013)
SNAI2_HUMAN.H11MO.0.A 		0.816 0.965
Snai2
M08973_2.00 		Mus musculus
VNRCACCTGYY
RRCAGGTGYNB		 Misc
Kulakovskiy et al.(2013)
SNAI2_MOUSE.H11MO.0.A 		0.816 0.965
SNAI2
M10102_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SLUG_Q6_01 		0.816 0.965
SNAI2
M10103_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SLUG_Q6_02 		0.816 0.965
SNAI2
M10104_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SLUG_Q6 		0.816 0.965
SNAI2
M00220_2.00 		Homo sapiens
NHACCTGY
RCAGGTDN		 PBM
Barrera et al.(2016)
SNAI2_D119E 		0.816 0.965
SNAI2
M04393_2.00 		Homo sapiens
YRCACCTGYN
NRCAGGTGYR		 SELEX
Yin et al.(2017)
SNAI2_eDBD_Methyl-HT-SELEX 		0.816 0.965
SNAI2
M04395_2.00 		Homo sapiens
YRCACCTGYN
NRCAGGTGYR		 SELEX
Yin et al.(2017)
SNAI2_FL_Methyl-HT-SELEX 		0.816 0.965
SNAI2
M00222_2.00 		Homo sapiens
HACYTGHNNN
NNNDCARGTD		 PBM
Barrera et al.(2016)
SNAI2_T234I 		0.821 0.965
esg
M06050_2.00 		Drosophila melanogaster
CACCTGH
DCAGGTG		 B1H
Zhu et al.(2011)
esg_SANGER_2.5_FBgn0001981 		0.767 0.807
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AAH72087 C2H2 ZF 126 148
AAH72087 C2H2 ZF 157 179
AAH72087 C2H2 ZF 183 205
AAH72087 C2H2 ZF 211 233
AAH72087 C2H2 ZF 239 260
AAI58209 C2H2 ZF 126 148
AAI58209 C2H2 ZF 157 179
AAI58209 C2H2 ZF 183 205
AAI58209 C2H2 ZF 211 233
AAI58209 C2H2 ZF 239 260
AAK54140 C2H2 ZF 126 148
AAK54140 C2H2 ZF 157 179
AAK54140 C2H2 ZF 183 205
AAK54140 C2H2 ZF 211 233
AAK54140 C2H2 ZF 239 260

Links

Other C2H2 ZF family TFs
Other Xenopus laevis TFs

103 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R003869 Calypte anna Aan_R003869 I 0.000
Aan_R015659 Calypte anna Aan_R015659 I 0.000
AB04741.1 Alternaria brassicicola AB04741.1 I 0.000
Afo_R009272 Aptenodytes forsteri Afo_R009272 I 0.000
Afo_R011092 Aptenodytes forsteri Afo_R011092 I 0.000
Alligator_sinensis_CCG010381.1 Alligator sinensis Alligator_sinensis_CCG010381.1 I 0.000
Aqu1.225495 Amphimedon queenslandica Aqu1.225495 I 0.000
A_07284 Schistosoma haematobium A_07284 I 0.000
Brh_R000015 Buceros rhinoceros Brh_R000015 I 0.000
Brh_R010356 Buceros rhinoceros Brh_R010356 I 0.000
ATEG_05203 Aspergillus terreus CADATEAG00005116 I 0.000
CapteG100741 Capitella teleta CapteG100741 I 0.000
CapteG49895 Capitella teleta CapteG49895 I 0.000
CapteG70907 Capitella teleta CapteG70907 I 0.000
CapteG88319 Capitella teleta CapteG88319 I 0.000
CBG25749 Caenorhabditis briggsae CBG25749 I 0.000
CCM_02544 Cordyceps militaris CCM_02544 I 0.000
CGI_10011802 Crassostrea gigas CGI_10011802 I 0.000
COCC4DRAFT_49159 Bipolaris maydis COCC4DRAFT_49159 I 0.000
COCCADRAFT_44321 Bipolaris zeicola COCCADRAFT_44321 I 0.000
COCMIDRAFT_53102 Bipolaris oryzae COCMIDRAFT_53102 I 0.000
COCVIDRAFT_49416 Bipolaris victoriae COCVIDRAFT_49416 I 0.000
D915_00592 Fasciola hepatica D915_00592 I 0.000
D915_04768 Fasciola hepatica D915_04768 I 0.000
D915_05481 Fasciola hepatica D915_05481 I 0.000
DILT_0000254701 Diphyllobothrium latum DILT_0000254701 I 0.000
DOTSEDRAFT_78718 Dothistroma septosporum DOTSEDRAFT_78718 I 0.000
ECPE_0000388901 Echinostoma caproni ECPE_0000388901 I 0.000
ENSAMXG00000000335 Astyanax mexicanus ENSAMXG00000000335 I 0.000
ENSAPLG00000010674 Anas platyrhynchos ENSAPLG00000010674 I 0.000
ENSCAFG00000010422 Canis familiaris ENSCAFG00000010422 I 0.000
ENSCSAG00000011743 Chlorocebus sabaeus ENSCSAG00000011743 I 0.000
IRX3 Dasypus novemcinctus ENSDNOG00000012985 I 0.000
irx7 Gasterosteus aculeatus ENSGACG00000011160 I 0.000
ENSMEUG00000004557 Macropus eugenii ENSMEUG00000004557 I 0.000
ENSMPUG00000007638 Mustela putorius furo ENSMPUG00000007638 I 0.000
ENSOANG00000029378 Ornithorhynchus anatinus ENSOANG00000029378 I 0.000
ENSOARG00000016067 Ovis aries ENSOARG00000016067 I 0.000
ENSONIG00000018672 Oreochromis niloticus ENSONIG00000018672 I 0.000
MKX Procavia capensis ENSPCAG00000014719 I 0.000
ENSPFOG00000006638 Poecilia formosa ENSPFOG00000006638 I 0.000
ENSPFOG00000013469 Poecilia formosa ENSPFOG00000013469 I 0.000
ENSPTRG00000039451 Pan troglodytes ENSPTRG00000039451 I 0.000
Irx3 Rattus norvegicus ENSRNOG00000011533 I 0.000
ENSSSCG00000009724 Sus scrofa ENSSSCG00000009724 I 0.000
MKX Tupaia belangeri ENSTBEG00000008150 I 0.000
mkxb Tetraodon nigroviridis ENSTNIG00000007881 I 0.000
mkxb Takifugu rubripes ENSTRUG00000004166 I 0.000
irx7 Takifugu rubripes ENSTRUG00000007926 I 0.000
ENSXMAG00000006967 Xiphophorus maculatus ENSXMAG00000006967 I 0.000
ENSXMAG00000012663 Xiphophorus maculatus ENSXMAG00000012663 I 0.000
estExt_fgenesh2_pg.C_2210037 Branchiostoma floridae estExt_fgenesh2_pg.C_2210037 I 0.000
estExt_Genewise1.C_110663 Cochliobolus heterostrophus C5 estExt_Genewise1.C_110663 I 0.000
FFUJ_12565 Fusarium fujikuroi FFUJ_12565 I 0.000
FGRRES_07914 Fusarium graminearum FGRRES_07914 D 0.000
FGRRES_17555 Fusarium graminearum FGRRES_17555 I 0.000
FOXG_13545 Fusarium oxysporum FOXG_13545 I 0.000
Gfo_R005354 Geospiza fortis Gfo_R005354 I 0.000
Gfo_R014865 Geospiza fortis Gfo_R014865 I 0.000
HelroG138488 Helobdella robusta HelroG138488 I 0.000
HelroG153600 Helobdella robusta HelroG153600 I 0.000
HelroG171177 Helobdella robusta HelroG171177 I 0.000
HMEL002096 Heliconius melpomene HMEL002096 I 0.000
HmN_000921700 Hymenolepis microstoma HmN_000921700 I 0.000
HmN_000922600 Hymenolepis microstoma HmN_000922600 I 0.000
HNAJ_0001179801 Hymenolepis nana HNAJ_0001179801 I 0.000
ISCW017111 Ixodes scapularis ISCW017111 I 0.000
L596_g21727 Steinernema carpocapsae L596_g21727 I 0.000
L892_g27282 Steinernema scapterisci L892_g27282 I 0.000
L898_g17064 Steinernema monticolum L898_g17064 I 0.000
Myotis_brandtii_Irx1_10035798 Myotis brandtii Myotis_brandtii_Irx1_10035798 I 0.000
Ocbimv22006483m.g Octopus bimaculoides Ocbimv22006483m.g I 0.000
Ogr18478 Ophisaurus gracilis Ogr18478 I 0.000
PTT_11733 Pyrenophora teres PTT_11733 I 0.000
PXEA_0002454601 Protopolystoma xenopodis PXEA_0002454601 I 0.000
SCUD_0000714801 Schistosoma curassoni SCUD_0000714801 I 0.000
SETTUDRAFT_162538 Setosphaeria turcica SETTUDRAFT_162538 I 0.000
Sjc_0052220 Schistosoma japonicum Sjc_0052220 I 0.000
SMAR002833 Strigamia maritima SMAR002833 I 0.000
SMAR007687 Strigamia maritima SMAR007687 I 0.000
SMRZ_0000148301 Schistosoma margrebowiei SMRZ_0000148301 I 0.000
SMTD_0002243001 Schistosoma mattheei SMTD_0002243001 I 0.000
SMUV_0000063001 Syphacia muris SMUV_0000063001 I 0.000
SNOG_06363 Stagonospora nodorum SNOG_06363 I 0.000
SNOG_06363 Phaeosphaeria nodorum SNOG_06363 I 0.000
SPER_0001325101 Spirometra erinaceieuropaei SPER_0001325101 I 0.000
SSLN_0000846501 Schistocephalus solidus SSLN_0000846501 I 0.000
Tal_R007088 Tyto alba Tal_R007088 I 0.000
TASK_0000658901 Taenia asiatica TASK_0000658901 I 0.000
TsM_000760900 Taenia solium TsM_000760900 I 0.000
TTAC_0000670801 Hydatigera taeniaeformis TTAC_0000670801 I 0.000
Z519_11142 Cladophialophora bantiana Z519_11142 I 0.000