chr5.CM0096.480.nc (Lotus japonicus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 chr5.CM0096.480.nc T146067_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AZF2
M01854_2.00 		Arabidopsis thaliana
NASTRNN
NNYASTN		 PBM
Weirauch et al.(2014)
pTH8258 		0.822 0.935
ZAT6
M00861_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT6 		0.803 0.935
ZAT9
M06817_2.00 		Arabidopsis thaliana
YTACTWHH
DDWAGTAR		 Dap-seq
OMalley et al.(2016)
At3g60580_col_a 		0.799 0.717
ZAT4
M01168_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Lambert et al.(2019)
pTH11142 		0.799 0.696
ZAT10
M01852_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7255 		0.796 0.870
ZAT10
M06799_2.00 		Arabidopsis thaliana
WSHHCACT
AGTGDDSW		 Dap-seq
OMalley et al.(2016)
STZ_colamp_a 		0.796 0.870
ZAT10
M06800_2.00 		Arabidopsis thaliana
YWSHNHCASTN
NASTGDNDSWR		 Dap-seq
OMalley et al.(2016)
STZ_col 		0.796 0.870
AZF1
M01860_2.00 		Arabidopsis thaliana
NWSYDNN
NNHRSWN		 PBM
Weirauch et al.(2014)
pTH7163 		0.787 0.804
AZF1
M06826_2.00 		Arabidopsis thaliana
WCACTVWCWNH
DNWGWBAGTGW		 Dap-seq
OMalley et al.(2016)
AZF1_colamp_a 		0.787 0.804
ZAT1
M01167_2.00 		Arabidopsis thaliana
NHRCTNN
NNAGYDN		 PBM
Lambert et al.(2019)
pTH10246 		0.776 0.696
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
chr5.CM0096.480.nc C2H2 ZF 84 106
chr5.CM0096.480.nc C2H2 ZF 142 164

Links

Other C2H2 ZF family TFs
Other Lotus japonicus TFs

230 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
A1O9_06998 Exophiala aquamarina A1O9_06998 I
ARB_03169 Arthroderma benhamiae ARB_03169 I
BDDG_03637 Blastomyces dermatitidis BDDG_03637 I
ACLA_024940 Aspergillus clavatus CADACLAG00003063 I
CADAFLAG00008334 Aspergillus flavus CADAFLAG00008334 I
AFUA_1G10580 Aspergillus fumigatus CADAFUAG00007238 I
CADANGAG00006576 Aspergillus niger CADANGAG00006576 I
ANIA_01217 Aspergillus nidulans CADANIAG00001407 D
CADAORAG00009146 Aspergillus oryzae CADAORAG00009146 I
NFIA_015070 Neosartorya fischeri CADNFIAG00000868 I
CIMG_08965 Coccidioides immitis CIMG_08965 I
CPC735_014230 Coccidioides posadasii CPC735_014230 I
EPUS_07013 Endocarpon pusillum EPUS_07013 I
EURHEDRAFT_518531 Aspergillus ruber EURHEDRAFT_518531 I
fgenesh1_pg.00083_#_673 Aspergillus carbonarius fgenesh1_pg.00083_#_673 I
H101_06311 Trichophyton interdigitale H101_06311 I
H102_03894 Trichophyton rubrum H102_03894 I
H105_03921 Trichophyton soudanense H105_03921 I
HCBG_03212 Histoplasma capsulatum HCBG_03212 I
HMPREF1541_00873 Cyphellophora europaea HMPREF1541_00873 I
M408DRAFT_281141 Serendipita vermifera M408DRAFT_281141 N
MCYG_03787 Microsporum canis MCYG_03787 I
MCYG_03787 Arthroderma otae MCYG_03787 I
MGYG_03394 Microsporum gypseum MGYG_03394 I
PAAG_02895 Paracoccidioides sp lutzii PAAG_02895 I
PABG_03356 Paracoccidioides brasiliensis PABG_03356 I
Pc16g04210 Penicillium chrysogenum Pc16g04210 I
PCH_Pc16g04210 Penicillium rubens PCH_Pc16g04210 I
PDE_07199 Penicillium oxalicum PDE_07199 I
PDIP_31370 Penicillium digitatum PDIP_31370 I
PEX1_030790 Penicillium expansum PEX1_030790 I
PITC_039850 Penicillium italicum PITC_039850 I
PMAA_043800 Penicillium marneffei PMAA_043800 I
PMAA_043800 Talaromyces marneffei PMAA_043800 I
PV08_07384 Exophiala spinifera PV08_07384 I
PV10_01375 Exophiala mesophila PV10_01375 I
PVAR5_8900 Byssochlamys spectabilis PVAR5_8900 I
TEQG_04003 Trichophyton equinum TEQG_04003 I
TESG_07530 Trichophyton tonsurans TESG_07530 I
TRV_02965 Trichophyton verrucosum TRV_02965 I
TSTA_074790 Talaromyces stipitatus TSTA_074790 I
U727_00434030131 Penicillium solitum U727_00434030131 I
UREG_03403 Uncinocarpus reesii UREG_03403 I