CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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AATE001257
(
Anopheles atroparvus
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
AATE001257
T147167_2.00
Vectorbase (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
bowl
M03676_2.00
Drosophila melanogaster
GCGTAABACNRGKAGYN
NRCTMCYNGTVTTACGC
SELEX
Nitta et al.(2015)
bowl_1
0.811
0.957
bowl
M03677_2.00
Drosophila melanogaster
NGCTACYGTRTTACGCN
NGCGTAAYACRGTAGCN
SELEX
Nitta et al.(2015)
bowl_2
0.811
0.957
sob
M03674_2.00
Drosophila melanogaster
RCTACYGNRTTACGCV
BGCGTAAYNCRGTAGY
SELEX
Nitta et al.(2015)
sob_1
0.811
0.957
sob
M03675_2.00
Drosophila melanogaster
NGCGTAABNSNRGTAGY
RCTACYNSNVTTACGCN
SELEX
Nitta et al.(2015)
sob_2
0.811
0.957
bowl
M06090_2.00
Drosophila melanogaster
RCTWCYGK
MCRGWAGY
B1H
Zhu et al.(2011)
bowl_SANGER_5_FBgn0004893
0.811
0.957
sob
M06088_2.00
Drosophila melanogaster
GCTWCTGBDNBDV
BHVNHVCAGWAGC
B1H
Zhu et al.(2011)
sob_SANGER_10_FBgn0004892
0.811
0.957
sob
M06089_2.00
Drosophila melanogaster
BDGCTACYGKDBNN
NNVHMCRGTAGCHV
B1H
Zhu et al.(2011)
sob_SOLEXA_5_FBgn0004892
0.811
0.957
OSR2
M04521_2.00
Homo sapiens
NGCTACYGBD
HVCRGTAGCN
SELEX
Yin et al.(2017)
OSR2_eDBD_HT-SELEX
0.795
0.896
OSR2
M08324_2.00
Homo sapiens
NBDGCTNCTGN
NCAGNAGCHVN
ChIP-seq
Schmitges et al.(2016)
Q8N2R0.MEME
0.795
0.896
OSR2
M08908_2.00
Homo sapiens
NBHNYWGCTNCTSHDB
VHDSAGNAGCWRNDVN
Misc
Kulakovskiy et al.(2013)
OSR2_HUMAN.H11MO.0.C
0.795
0.896
OSR2
M04522_2.00
Homo sapiens
NGCTACTGND
HNCAGTAGCN
SELEX
Yin et al.(2017)
OSR2_eDBD_Methyl-HT-SELEX
0.795
0.896
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AATE001257-PA
C2H2 ZF
335
357
FICKFCNRQFTKSYNLLIHERTH
AATE001257-PA
C2H2 ZF
363
385
YSCDICGKAFRRQDHLRDHRYIH
AATE001257-PA
C2H2 ZF
391
413
FKCLECGKGFCQSRTLAVHKILH
AATE001257-PA
C2H2 ZF
419
441
HKCPVCSRSFNQRSNLKTHLLTH
AATE001257-PA
C2H2 ZF
447
469
YHCIACGKVFRRNCDLRRHSLTH
Links
Other
C2H2 ZF
family TFs
Other
Anopheles atroparvus
TFs
110 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
EuGene15000120
Heterobasidion annosum
EuGene15000120
N
0.000
EuGene3001157
Heterobasidion annosum
EuGene3001157
N
0.000
fgenesh3_kg.15__10__3845_1_CCOZ_CCPA_CCPB_CCPC_EXTA
Heterobasidion annosum
fgenesh3_kg.15__10__3845_1_CCOZ_CCPA_CCPB_CCPC_EXTA
N
0.000
fgenesh3_kg.15__30__3845_1_CCOZ_CCPA_CCPB_CCPC_EXTA
Heterobasidion annosum
fgenesh3_kg.15__30__3845_1_CCOZ_CCPA_CCPB_CCPC_EXTA
N
0.000
fgenesh3_kg.27__1__3845_1_CCOZ_CCPA_CCPB_CCPC_EXTA
Heterobasidion annosum
fgenesh3_kg.27__1__3845_1_CCOZ_CCPA_CCPB_CCPC_EXTA
N
0.000
fgenesh3_kg.3__397__3845_1_CCOZ_CCPA_CCPB_CCPC_EXTA
Heterobasidion annosum
fgenesh3_kg.3__397__3845_1_CCOZ_CCPA_CCPB_CCPC_EXTA
N
0.000
HETIRDRAFT_144838
Heterobasidion irregulare
HETIRDRAFT_144838
N
0.000
HETIRDRAFT_165304
Heterobasidion irregulare
HETIRDRAFT_165304
N
0.000
HETIRDRAFT_316533
Heterobasidion irregulare
HETIRDRAFT_316533
N
0.000
HETIRDRAFT_316690
Heterobasidion irregulare
HETIRDRAFT_316690
N
0.000
HETIRDRAFT_412619
Heterobasidion irregulare
HETIRDRAFT_412619
N
0.000
HETIRDRAFT_419047
Heterobasidion irregulare
HETIRDRAFT_419047
N
0.000
HETIRDRAFT_440636
Heterobasidion irregulare
HETIRDRAFT_440636
N
0.000
Moror_495
Moniliophthora roreri
Moror_495
N
0.000