ASU_13052 (Ascaris suum)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 ASU_13052 T152338_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
sptf-3
M00632_2.00 		Caenorhabditis elegans
NNMCGCCCMY
RKGGGCGKNN		 PBM
Narasimhan et al.(2015)
pTH9394 		0.820 0.928
Sp1
M00765_2.00 		Mus musculus
NMCGCCCMY
RKGGGCGKN		 PBM
Weirauch et al.(2013)
pTH0978 		0.766 0.768
SP1
M02921_2.00 		Homo sapiens
RCCMCDCCCMH
DKGGGHGKGGY		 SELEX
Jolma et al.(2013)
SP1_1 		0.766 0.768
SP1
M04605_2.00 		Homo sapiens
NWRRCCACGCCCMCH
DGKGGGCGTGGYYWN		 SELEX
Yin et al.(2017)
SP1_eDBD_HT-SELEX 		0.766 0.768
SP1
M08096_2.00 		Homo sapiens
BYCCCKCCCCY
RGGGGMGGGRV		 ChIP-seq
Mathelier et al.(2014)
MA0079.3 		0.766 0.768
SP1
M08363_2.00 		Homo sapiens
CCCHNBCYCCDCCCY
RGGGHGGRGVNDGGG		 ChIP-seq
Schmitges et al.(2016)
P08047.MEME 		0.766 0.768
SP1
M08938_2.00 		Homo sapiens
BCSSSBCCHVGCCCCGCCCCYN
NRGGGGCGGGGCBDGGVSSSGV		 Misc
Kulakovskiy et al.(2013)
SP1_HUMAN.H11MO.0.A 		0.766 0.768
Sp1
M08963_2.00 		Mus musculus
CCCBKCYCCKCCCCCNBCYCSBSC
GSVSGRGVNGGGGGMGGRGMVGGG		 Misc
Kulakovskiy et al.(2013)
SP1_MOUSE.H11MO.0.A 		0.766 0.768
SP1
M10294_2.00 		Homo sapiens
DSCMHGCCYH
DRGGCDKGSH		 Transfac
Matys et al.(2006)
V$SP1_01 		0.766 0.768
SP1
M10295_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SP1_02 		0.766 0.768
SP1
M10296_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SP1_07 		0.766 0.768
SP1
M10297_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SP1_08 		0.766 0.768
SP1
M10298_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SP1_Q2_02 		0.766 0.768
SP1
M10299_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SP1_Q3 		0.766 0.768
SP1
M10300_2.00 		Homo sapiens
VVCCCCGCCCMBN
NVKGGGCGGGGBB		 Transfac
Matys et al.(2006)
V$SP1_Q6 		0.766 0.768
SP1
M04606_2.00 		Homo sapiens
NWRGCCMCGCCCMYH
DRKGGGCGKGGCYWN		 SELEX
Yin et al.(2017)
SP1_eDBD_Methyl-HT-SELEX 		0.766 0.768
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ASU_13052 C2H2 ZF 264 286
ASU_13052 C2H2 ZF 292 316
ASU_13052 C2H2 ZF 322 344

Links

Other C2H2 ZF family TFs
Other Ascaris suum TFs

127 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ASIM_0000041701 Anisakis simplex ASIM_0000041701 N 0.000
BXY_0179600 Bursaphelenchus xylophilus BXY_0179600 I 0.000
CBG15006 Caenorhabditis briggsae CBG15006 I 0.000
CBG19870 Caenorhabditis briggsae CBG19870 I 0.000
CBN08077 Caenorhabditis brenneri CBN08077 I 0.000
CBN08571 Caenorhabditis brenneri CBN08571 I 0.000
CBN10811 Caenorhabditis brenneri CBN10811 I 0.000
CBN16259 Caenorhabditis brenneri CBN16259 I 0.000
CJA03362 Caenorhabditis japonica CJA03362 N 0.000
CJA19491 Caenorhabditis japonica CJA19491 I 0.000
CRE09911 Caenorhabditis remanei CRE09911 I 0.000
CRE14116 Caenorhabditis remanei CRE14116 I 0.000
CRE28659 Caenorhabditis remanei CRE28659 I 0.000
CRE30546 Caenorhabditis remanei CRE30546 I 0.000
GPLIN_000686000 Globodera pallida GPLIN_000686000 N 0.000
HCOI00878400 Haemonchus contortus HCOI00878400 N 0.000
HCOI02063000 Haemonchus contortus HCOI02063000 N 0.000
HCOI02063200 Haemonchus contortus HCOI02063200 N 0.000
HCOI02063400 Haemonchus contortus HCOI02063400 N 0.000
HCOI02063800 Haemonchus contortus HCOI02063800 N 0.000
HCOI02064100 Haemonchus contortus HCOI02064100 N 0.000
L596_g25326 Steinernema carpocapsae L596_g25326 N 0.000
L889_g23169 Steinernema feltiae L889_g23169 N 0.000
L892_g27553 Steinernema scapterisci L892_g27553 N 0.000
L893_g2097 Steinernema glaseri L893_g2097 N 0.000
L898_g11980 Steinernema monticolum L898_g11980 N 0.000
Minc11986 Meloidogyne incognita Minc11986 I 0.000
PPA21285 Pristionchus pacificus PPA21285 I 0.000
PTRK_0000785300 Parastrongyloides trichosuri PTRK_0000785300 I 0.000
scaffold51-EXSNAP2012.23 Pristionchus exspectatus scaffold51-EXSNAP2012.23 I 0.000
SMUV_0001018601 Syphacia muris SMUV_0001018601 N 0.000
SPAL_0001690000 Strongyloides papillosus SPAL_0001690000 I 0.000
SSTP_0000433200 Strongyloides stercoralis SSTP_0000433200 I 0.000
SVE_0662100 Strongyloides venezuelensis SVE_0662100 I 0.000
TCNE_0000088101 Toxocara canis TCNE_0000088101 N 0.000
nhr-46 Caenorhabditis elegans WBGene00003636 D 0.000
nhr-97 Caenorhabditis elegans WBGene00003687 N 0.000