D917_04158 (Trichinella nativa)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 D917_04158 T152863_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Sp4
M01862_2.00 		Mus musculus
NMCGCCCMY
RKGGGCGKN		 PBM
Weirauch et al.(2014)
pTH4998 		0.763 0.783
Sp4
M00133_2.00 		Mus musculus
HMCGCCCMYN
NRKGGGCGKD		 PBM
Badis et al.(2009)
Sp4_1011 		0.763 0.783
Sp4
M05859_2.00 		Mus musculus
DGNYMCGCCCHNN
NNDGGGCGKRNCH		 SMiLE-seq
Isakova et al.(2017)
SP4 		0.763 0.783
Sp4
M08975_2.00 		Mus musculus
BYHDKCYCCGCCYYYHBSBB
VVSVDRRRGGCGGRGMHDRV		 Misc
Kulakovskiy et al.(2013)
SP4_MOUSE.H11MO.0.B 		0.763 0.783
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
D917_04158 C2H2 ZF 1050 1074
D917_04158 C2H2 ZF 1080 1104
D917_04158 C2H2 ZF 1110 1132

Links

Other C2H2 ZF family TFs
Other Trichinella nativa TFs

26 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACEP10169 Atta cephalotes ACEP10169 I 0.776
Aqu1.217456 Amphimedon queenslandica Aqu1.217456 I 0.763
ASIM_0001129301 Anisakis simplex ASIM_0001129301 I 0.766
Cflo_10237--XP_624316.2_APIME Camponotus floridanus Cflo_10237--XP_624316.2_APIME I 0.760
CGI_10013026 Crassostrea gigas CGI_10013026 I 0.760
DME_0000423301 Dracunculus medinensis DME_0000423301 I 0.766
EFV52203 Trichinella spiralis EFV52203 I 0.827
ENSAMXG00000004713 Astyanax mexicanus ENSAMXG00000004713 I 0.763
ENSAMXG00000015260 Astyanax mexicanus ENSAMXG00000015260 I 0.763
sp3a Danio rerio ENSDARG00000001549 I 0.763
sp4 Danio rerio ENSDARG00000005186 I 0.763
ENSGMOG00000001311 Gadus morhua ENSGMOG00000001311 I 0.763
Sp4 Mus musculus ENSMUSG00000025323 D 0.763
ENSPMAG00000001574 Petromyzon marinus ENSPMAG00000001574 I 0.756
Sp4 Rattus norvegicus ENSRNOG00000005472 I 0.763
GB41800 Apis mellifera GB41800 I 0.776
GB48277 Apis mellifera GB48277 I 0.763
HelroG78675 Helobdella robusta HelroG78675 I 0.763
HHAL002953-PA Halyomorpha halys HHAL002953-PA I 0.763
ISCW020450 Ixodes scapularis ISCW020450 I 0.763
NEMVEDRAFT_v1g27142 Nematostella vectensis NEMVEDRAFT_v1g27142 I 0.763
NV18748 Nasonia vitripennis NV18748 I 0.776
RSKR_0000732400 Rhabditophanes kr3021 RSKR_0000732400 I 0.757
SBAD_0000755901 Soboliphyme baturini SBAD_0000755901 I 0.757
TriadG7637 Trichoplax adhaerens TriadG7637 I 0.763
XP_002166590.1 Hydra magnipapillata XP_002166590.1 I 0.763