CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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L893_g27175
(
Steinernema glaseri
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
L893_g27175
T154674_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
SCRT1
M02929_2.00
Homo sapiens
RHKCAACAGGTGKNH
DNMCACCTGTTGMDY
SELEX
Jolma et al.(2013)
SCRT1_1
0.773
0.798
SCRT1
M04655_2.00
Homo sapiens
NKCAACAGGTD
HACCTGTTGMN
SELEX
Yin et al.(2017)
SCRT1_eDBD_HT-SELEX
0.773
0.798
SCRT1
M08397_2.00
Homo sapiens
RWKCAACAGGTG
CACCTGTTGMWY
ChIP-seq
Schmitges et al.(2016)
Q9BWW7_1-4.RCADE
0.773
0.798
SCRT1
M04656_2.00
Homo sapiens
NGCRACAGGTD
HACCTGTYGCN
SELEX
Yin et al.(2017)
SCRT1_eDBD_Methyl-HT-SELEX
0.773
0.798
SCRT2
M02925_2.00
Homo sapiens
RHGCAACAGGTGB
VCACCTGTTGCDY
SELEX
Jolma et al.(2013)
SCRT2_1
0.763
0.772
SCRT2
M04643_2.00
Homo sapiens
NGCAACAGGTD
HACCTGTTGCN
SELEX
Yin et al.(2017)
SCRT2_eDBD_HT-SELEX
0.763
0.772
SCRT2
M04644_2.00
Homo sapiens
NGCRACAGGTG
CACCTGTYGCN
SELEX
Yin et al.(2017)
SCRT2_eDBD_Methyl-HT-SELEX
0.763
0.772
scrt
M03673_2.00
Drosophila melanogaster
RHGCAACAGGTGK
MCACCTGTTGCDY
SELEX
Nitta et al.(2015)
scrt_1
0.759
0.754
scrt
M06085_2.00
Drosophila melanogaster
MCCACCTGTTG
CAACAGGTGGK
B1H
Zhu et al.(2011)
scrt_SANGER_2.5_FBgn0004880
0.759
0.754
scrt
M06086_2.00
Drosophila melanogaster
DNKCAACAGGTGK
MCACCTGTTGMNH
B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_1_FBgn0004880
0.759
0.754
scrt
M06087_2.00
Drosophila melanogaster
VMCACCTGTTGMN
NKCAACAGGTGKB
B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_2_FBgn0004880
0.759
0.754
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
L893_g27175.t1
C2H2 ZF
158
180
HVCGECGKSYATSSNLSRHKQTH
L893_g27175.t1
C2H2 ZF
189
211
KKCPFCHKVYVSMPAYSMHLLTH
L893_g27175.t1
C2H2 ZF
215
237
HKCHLCGKVFSRPWLLQGHIRSH
L893_g27175.t1
C2H2 ZF
243
265
FGCSYCGKAFADRSNLRAHMHTH
L893_g27175.t1
C2H2 ZF
271
292
HQCSGCGKLFALKSYLNKHMDM
Links
Other
C2H2 ZF
family TFs
Other
Steinernema glaseri
TFs
179 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ENSTNIG00000007837
Tetraodon nigroviridis
ENSTNIG00000007837
I
ENSTRUG00000001493
Takifugu rubripes
ENSTRUG00000001493
I
estExt_fgenesh2_pg.C_2610044
Branchiostoma floridae
estExt_fgenesh2_pg.C_2610044
I
estExt_fgenesh2_pg.C_3520032
Branchiostoma floridae
estExt_fgenesh2_pg.C_3520032
I
HHAL004853-PA
Halyomorpha halys
HHAL004853-PA
I
ISCW016537
Ixodes scapularis
ISCW016537
N
RPRC000496
Rhodnius prolixus
RPRC000496
I
SMAR012956
Strigamia maritima
SMAR012956
N