L893_g27175 (Steinernema glaseri)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 L893_g27175 T154674_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
SCRT1
M02929_2.00
Homo sapiens
RHKCAACAGGTGKNH

DNMCACCTGTTGMDY
SELEX
Jolma et al.(2013)
SCRT1_1
0.773 0.798
SCRT1
M04655_2.00
Homo sapiens
NKCAACAGGTD

HACCTGTTGMN
SELEX
Yin et al.(2017)
SCRT1_eDBD_HT-SELEX
0.773 0.798
SCRT1
M08397_2.00
Homo sapiens
RWKCAACAGGTG

CACCTGTTGMWY
ChIP-seq
Schmitges et al.(2016)
Q9BWW7_1-4.RCADE
0.773 0.798
SCRT1
M04656_2.00
Homo sapiens
NGCRACAGGTD

HACCTGTYGCN
SELEX
Yin et al.(2017)
SCRT1_eDBD_Methyl-HT-SELEX
0.773 0.798
SCRT2
M02925_2.00
Homo sapiens
RHGCAACAGGTGB

VCACCTGTTGCDY
SELEX
Jolma et al.(2013)
SCRT2_1
0.763 0.772
SCRT2
M04643_2.00
Homo sapiens
NGCAACAGGTD

HACCTGTTGCN
SELEX
Yin et al.(2017)
SCRT2_eDBD_HT-SELEX
0.763 0.772
SCRT2
M04644_2.00
Homo sapiens
NGCRACAGGTG

CACCTGTYGCN
SELEX
Yin et al.(2017)
SCRT2_eDBD_Methyl-HT-SELEX
0.763 0.772
scrt
M03673_2.00
Drosophila melanogaster
RHGCAACAGGTGK

MCACCTGTTGCDY
SELEX
Nitta et al.(2015)
scrt_1
0.759 0.754
scrt
M06085_2.00
Drosophila melanogaster
MCCACCTGTTG

CAACAGGTGGK
B1H
Zhu et al.(2011)
scrt_SANGER_2.5_FBgn0004880
0.759 0.754
scrt
M06086_2.00
Drosophila melanogaster
DNKCAACAGGTGK

MCACCTGTTGMNH
B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_1_FBgn0004880
0.759 0.754
scrt
M06087_2.00
Drosophila melanogaster
VMCACCTGTTGMN

NKCAACAGGTGKB
B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_2_FBgn0004880
0.759 0.754
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
L893_g27175.t1 C2H2 ZF 158 180
L893_g27175.t1 C2H2 ZF 189 211
L893_g27175.t1 C2H2 ZF 215 237
L893_g27175.t1 C2H2 ZF 243 265
L893_g27175.t1 C2H2 ZF 271 292

Links

Other C2H2 ZF family TFs
Other Steinernema glaseri TFs

179 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ENSTNIG00000007837 Tetraodon nigroviridis ENSTNIG00000007837 I
ENSTRUG00000001493 Takifugu rubripes ENSTRUG00000001493 I
estExt_fgenesh2_pg.C_2610044 Branchiostoma floridae estExt_fgenesh2_pg.C_2610044 I
estExt_fgenesh2_pg.C_3520032 Branchiostoma floridae estExt_fgenesh2_pg.C_3520032 I
HHAL004853-PA Halyomorpha halys HHAL004853-PA I
ISCW016537 Ixodes scapularis ISCW016537 N
RPRC000496 Rhodnius prolixus RPRC000496 I
SMAR012956 Strigamia maritima SMAR012956 N