nRc.2.0.1.g12535 (Romanomermis culicivorax)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 nRc.2.0.1.g12535 T155451_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
FEZF1
M08307_2.00 		Homo sapiens
NNBTGYYYTTTTNNN
NNNAAAARRRCAVNN		 ChIP-seq
Schmitges et al.(2016)
A0PJY2_1-5.RCADE 		0.787 0.891
FEZF1
M08889_2.00 		Homo sapiens
DYTGYYCWTTTN
NAAAWGRRCARH		 Misc
Kulakovskiy et al.(2013)
FEZF1_HUMAN.H11MO.0.C 		0.787 0.891
erm
M03686_2.00 		Drosophila melanogaster
TGATTGCTCWTTT
AAAWGAGCAATCA		 SELEX
Nitta et al.(2015)
CG31670_1 		0.773 0.855
erm
M06128_2.00 		Drosophila melanogaster
KWTGYKCWTTT
AAAWGMRCAWM		 B1H
Zhu et al.(2011)
CG31670_SANGER_5_FBgn0031375 		0.773 0.855
erm
M06129_2.00 		Drosophila melanogaster
BBRTTGCTCWTTTBN
NVAAAWGAGCAAYVV		 B1H
Zhu et al.(2011)
CG31670_SOLEXA_5_FBgn0031375 		0.773 0.855
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
nRc.2.0.1.t12535-RA C2H2 ZF 267 289
nRc.2.0.1.t12535-RA C2H2 ZF 295 317
nRc.2.0.1.t12535-RA C2H2 ZF 323 345
nRc.2.0.1.t12535-RA C2H2 ZF 351 373
nRc.2.0.1.t12535-RA C2H2 ZF 383 405
nRc.2.0.1.t12535-RA C2H2 ZF 411 434

Links

Other C2H2 ZF family TFs
Other Romanomermis culicivorax TFs

161 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ECANG7_00250 Echinococcus canadensis ECANG7_00250 N 0.000
HDID_0000586301 Hymenolepis diminuta HDID_0000586301 N 0.000
HmN_000456100 Hymenolepis microstoma HmN_000456100 N 0.000
HNAJ_0000152301 Hymenolepis nana HNAJ_0000152301 N 0.000
TsM_000603900 Taenia solium TsM_000603900 N 0.000
TTAC_0000107601 Hydatigera taeniaeformis TTAC_0000107601 N 0.000