CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

nRc.2.0.1.g22468 *(Romanomermis culicivorax)* C2H2 ZF
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00096 (zf-C2H2)	IPR007087	nRc.2.0.1.g22468	T155478_2.00	WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
opa M03668_2.00	Drosophila melanogaster	BVCCCCCCRYNGHB	VDCNRYGGGGGGBV	SELEX Nitta et al.(2015) opa_1	0.801	0.879
opa M05861_2.00	Drosophila melanogaster	VCCCCCCRYNGNK	MNCNRYGGGGGGB	SMiLE-seq Isakova et al.(2017) Opa	0.801	0.879
opa M06468_2.00	Drosophila melanogaster	GMCCCCCCGCDG	CHGCGGGGGGKC	B1H Mathelier et al.(2014) MA0456.1	0.801	0.879
opa M06062_2.00	Drosophila melanogaster	GMCCCCCCRCDG	CHGYGGGGGGKC	B1H Zhu et al.(2011) opa_NAR_FBgn0003002	0.801	0.879
opa M06063_2.00	Drosophila melanogaster	MKVMMCCCCMCYR	YRGKGGGGKKBMK	B1H Zhu et al.(2011) Opa_SANGER_5_FBgn0003002	0.801	0.879
For this family, TFs with SR scores > 0.755* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
nRc.2.0.1.t22468-RA	C2H2 ZF	257	284	HACYWKDCPRNGKPFKAKYKLVNHIRVH
nRc.2.0.1.t22468-RA	C2H2 ZF	290	314	FPCTVAGCGKVFARSENLKIHKRTH
nRc.2.0.1.t22468-RA	C2H2 ZF	320	344	FKCDHPGCDRRFANSSDRKKHTHVH
nRc.2.0.1.t22468-RA	C2H2 ZF	350	373	YNCKVKGCEKTYTHPSSLRKHMKV

Links
Other C2H2 ZF family TFs
Other *Romanomermis culicivorax* TFs