YBX2 (Monodelphis domestica)
CSD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00313 (CSD) IPR002059 ENSMODG00000017596 T164641_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
YBX1
M04661_2.00 		Homo sapiens
GRTGGWACR
YGTWCCAYC		 SELEX
Yin et al.(2017)
YBX1_eDBD_HT-SELEX 		0.970 0.970
YBX1
M10411_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$YB1_Q3 		0.970 0.970
YBX1
M10412_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$YB1_Q4 		0.970 0.970
YBX1
M04662_2.00 		Homo sapiens
GRTGKDRCD
HGYHMCAYC		 SELEX
Yin et al.(2017)
YBX1_eDBD_Methyl-HT-SELEX 		0.970 0.970
NEMVEDRAFT_v1g104083
M01207_2.00 		Nematostella vectensis
NNNDDHRN
NYDHHNNN		 PBM
Lambert et al.(2019)
pTH9768 		0.788 0.788
cey-1
M01903_2.00 		Caenorhabditis elegans
NNNGRTRDD
HHYAYCNNN		 PBM
Weirauch et al.(2014)
pTH8991 		0.758 0.758
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSMODP00000021948 CSD 53 122

Links

Other CSD family TFs
Other Monodelphis domestica TFs

364 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R000701 Calypte anna Aan_R000701 N
Afo_R002412 Aptenodytes forsteri Afo_R002412 N
Alligator_sinensis_CCG003108.1 Alligator sinensis Alligator_sinensis_CCG003108.1 N
Aqu1.220698 Amphimedon queenslandica Aqu1.220698 I 0.727
Brh_R006311 Buceros rhinoceros Brh_R006311 N
CapteG105284 Capitella teleta CapteG105284 I 0.712
CapteG121832 Capitella teleta CapteG121832 I 0.735
CapteG50229 Capitella teleta CapteG50229 I 0.712
CapteG55545 Capitella teleta CapteG55545 I 0.712
CapteG58131 Capitella teleta CapteG58131 I 0.727
CJA05984 Caenorhabditis japonica CJA05984 I 0.727
Cmyd_10015463 Chelonia mydas Cmyd_10015463 N
DICVIV_10680 Dictyocaulus viviparus DICVIV_10680 I 0.742
ECPE_0001391101 Echinostoma caproni ECPE_0001391101 I 0.742
ENSAMEG00000007421 Ailuropoda melanoleuca ENSAMEG00000007421 I 0.727
ENSAMEG00000011882 Ailuropoda melanoleuca ENSAMEG00000011882 N
ENSAPLG00000006218 Anas platyrhynchos ENSAPLG00000006218 N
GATAD2A Bos taurus ENSBTAG00000003034 N
GATAD2A Canis familiaris ENSCAFG00000014267 N
GATAD2A Callithrix jacchus ENSCJAG00000005685 N
GATAD2A Cavia porcellus ENSCPOG00000015396 N
ENSCSAG00000005096 Chlorocebus sabaeus ENSCSAG00000005096 N
GATAD2A Dasypus novemcinctus ENSDNOG00000041689 N
ENSDNOG00000042304 Dasypus novemcinctus ENSDNOG00000042304 I 0.732
ENSDNOG00000043057 Dasypus novemcinctus ENSDNOG00000043057 I 0.712
Gatad2a Dipodomys ordii ENSDORG00000008536 N
GATAD2A Equus caballus ENSECAG00000012875 N
ENSETEG00000014789 Echinops telfairi ENSETEG00000014789 I 0.727
ENSFALG00000009125 Ficedula albicollis ENSFALG00000009125 N
GATAD2A Felis catus ENSFCAG00000014327 N
GATAD2A Homo sapiens ENSG00000167491 N
gatad2ab Gasterosteus aculeatus ENSGACG00000013045 N
ENSGALG00000002928 Gallus gallus ENSGALG00000002928 N
GATAD2A Gorilla gorilla ENSGGOG00000005973 N
ENSGMOG00000007431 Gadus morhua ENSGMOG00000007431 N
ENSLACG00000008883 Latimeria chalumnae ENSLACG00000008883 N
ENSLOCG00000004919 Lepisosteus oculatus ENSLOCG00000004919 N
GATAD2A Meleagris gallopavo ENSMGAG00000004036 N
GATAD2A Microcebus murinus ENSMICG00000015636 N
YBX3 Myotis lucifugus ENSMLUG00000007476 I 0.712
GATAD2A Myotis lucifugus ENSMLUG00000017364 N
ENSMMUG00000022298 Macaca mulatta ENSMMUG00000022298 N
GATAD2A Monodelphis domestica ENSMODG00000007189 N
ENSMPUG00000010386 Mustela putorius furo ENSMPUG00000010386 I 0.712
ENSMPUG00000015399 Mustela putorius furo ENSMPUG00000015399 N
ENSNLEG00000006277 Nomascus leucogenys ENSNLEG00000006277 N
GATAD2A Ornithorhynchus anatinus ENSOANG00000006409 N
ENSOARG00000007874 Ovis aries ENSOARG00000007874 N
YBX3 Oryctolagus cuniculus ENSOCUG00000001889 I 0.727
GATAD2A Oryctolagus cuniculus ENSOCUG00000017513 N
GATAD2A Otolemur garnettii ENSOGAG00000007442 N
ENSOGAG00000024472 Otolemur garnettii ENSOGAG00000024472 I 0.727
ENSOGAG00000028757 Otolemur garnettii ENSOGAG00000028757 I 0.712
ENSONIG00000002454 Oreochromis niloticus ENSONIG00000002454 N
gatad2ab Oryzias latipes ENSORLG00000000720 N
ENSP00000384899 Macaca fascicularis ENSP00000384899 N
ENSP00000384899-D1 Bos grunniens ENSP00000384899-D1 N
ENSPANG00000011632 Papio anubis ENSPANG00000011632 N
ENSPFOG00000002553 Poecilia formosa ENSPFOG00000002553 N
ENSPFOG00000003089 Poecilia formosa ENSPFOG00000003089 N
ENSPMAG00000000934 Petromyzon marinus ENSPMAG00000000934 N
ENSPPYG00000001466 Pongo abelii ENSPPYG00000001466 I 0.727
ENSPPYG00000009769 Pongo abelii ENSPPYG00000009769 N
ENSPSIG00000015717 Pelodiscus sinensis ENSPSIG00000015717 N
GATAD2A Pan troglodytes ENSPTRG00000010739 N
GATAD2A Sorex araneus ENSSARG00000005282 N
ENSSHAG00000013178 Sarcophilus harrisii ENSSHAG00000013178 N
GATAD2A Sus scrofa ENSSSCG00000013938 N
ENSSSCG00000028485 Sus scrofa ENSSSCG00000028485 I 0.712
ENSSTOG00000002108 Ictidomys tridecemlineatus ENSSTOG00000002108 I 0.712
ENSSTOG00000022640 Ictidomys tridecemlineatus ENSSTOG00000022640 N
GATAD2A Tupaia belangeri ENSTBEG00000015854 N
GATAD2A Taeniopygia guttata ENSTGUG00000013885 N
gatad2ab Tetraodon nigroviridis ENSTNIG00000013200 N
gatad2ab Takifugu rubripes ENSTRUG00000018122 N
ENSTSYG00000000285 Tarsius syrichta ENSTSYG00000000285 N
GATAD2A Tursiops truncatus ENSTTRG00000009875 N
GATAD2A Vicugna pacos ENSVPAG00000003278 N
ENSXMAG00000012323 Xiphophorus maculatus ENSXMAG00000012323 N
genemark-nMf.1.1.scaf00296-processed-gene-0.4 Meloidogyne floridensis genemark-nMf.1.1.scaf00296-processed-gene-0.4 I 0.712
Gfo_R007527 Geospiza fortis Gfo_R007527 N
HCOI01877200 Haemonchus contortus HCOI01877200 I 0.742
HPBE_0000695301 Heligmosomoides bakeri HPBE_0000695301 I 0.742
HPLM_0000375501 Haemonchus placei HPLM_0000375501 I 0.742
L596_g21676 Steinernema carpocapsae L596_g21676 I 0.742
L889_g15794 Steinernema feltiae L889_g15794 I 0.742
L892_g19487 Steinernema scapterisci L892_g19487 I 0.742
L893_g29692 Steinernema glaseri L893_g29692 I 0.742
MhA1_Contig2458.frz3.gene1 Meloidogyne hapla MhA1_Contig2458.frz3.gene1 I 0.712
Minc12652 Meloidogyne incognita Minc12652 I 0.712
Myotis_brandtii_GATAD2A_10018560 Myotis brandtii Myotis_brandtii_GATAD2A_10018560 N
NBR_0000795701 Nippostrongylus brasiliensis NBR_0000795701 I 0.742
NECAME_15956 Necator americanus NECAME_15956 I 0.742
OESDEN_18169 Oesophagostomum dentatum OESDEN_18169 I 0.742
Ogr08049 Ophisaurus gracilis Ogr08049 N
PTRK_0000574400 Parastrongyloides trichosuri PTRK_0000574400 I 0.727
Pvit_05963 Pogona vitticeps Pvit_05963 N
RSKR_0000861200 Rhabditophanes kr3021 RSKR_0000861200 I 0.727
SBAD_0000071701 Soboliphyme baturini SBAD_0000071701 I 0.712
SPAL_0000982100 Strongyloides papillosus SPAL_0000982100 I 0.712
SSTP_0000685800 Strongyloides stercoralis SSTP_0000685800 I 0.712
SVE_1573400 Strongyloides venezuelensis SVE_1573400 I 0.712
SVUK_0001307901 Strongylus vulgaris SVUK_0001307901 I 0.742
T265_06248 Opisthorchis viverrini T265_06248 I 0.742
Tal_R009898 Tyto alba Tal_R009898 N
TELCIR_06115 Teladorsagia circumcincta TELCIR_06115 I 0.742
TRE_0001884901 Trichobilharzia regenti TRE_0001884901 I 0.712
gatad2a Xenopus tropicalis XB-GENE-1015730 N