LIN28B (Oryctolagus cuniculus)
CSD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00313 (CSD) IPR002059 ENSOCUG00000017850 T164684_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LIN28B
M04663_2.00 		Homo sapiens
CGCGRWRDRRCDGCG
CGCHGYYHYWYCGCG		 SELEX
Yin et al.(2017)
LIN28B_FL_HT-SELEX 		1.000 1.000
LIN28B
M04664_2.00 		Homo sapiens
CGCGRTRNNRCDGCG
CGCHGYNNYAYCGCG		 SELEX
Yin et al.(2017)
LIN28B_FL_Methyl-HT-SELEX 		1.000 1.000
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSOCUP00000015330 CSD 1 62

Links

Other CSD family TFs
Other Oryctolagus cuniculus TFs

134 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CADAFLAG00012297 Aspergillus flavus CADAFLAG00012297 I 0.000
CADAORAG00004258 Aspergillus oryzae CADAORAG00004258 I 0.000
FFUJ_14768 Fusarium fujikuroi FFUJ_14768 N 0.000
FVEG_11866 Fusarium verticillioides FVEG_11866 N 0.000
GNLVRS01_PISO0I18070g Millerozyma farinosa GNLVRS01_PISO0I18070g N 0.000
GNLVRS01_PISO0J19831g Millerozyma farinosa GNLVRS01_PISO0J19831g N 0.000
PAN0_005c2519 Pseudozyma antarctica PAN0_005c2519 N 0.000
PHSY_000986 Pseudozyma hubeiensis PHSY_000986 N 0.000
PIIN_01818 Piriformospora indica PIIN_01818 N 0.000
PIIN_04092 Piriformospora indica PIIN_04092 N 0.000
PIIN_04332 Piriformospora indica PIIN_04332 N 0.000
PSEUBRA_SCAF5g02278 Pseudozyma brasiliensis PSEUBRA_SCAF5g02278 N 0.000
RHTO_05590 Rhodosporidium toruloides RHTO_05590 N 0.000
S40285_05647 Stachybotrys chlorohalonata S40285_05647 N 0.000
sr13818 Sporisorium reilianum sr13818 N 0.000
UM02765 Ustilago maydis UM02765 N 0.000
VHEMI07618 Torrubiella hemipterigena VHEMI07618 N 0.000
ZBAI_02843 Zygosaccharomyces bailii ZBAI_02843 I 0.000
ZBAI_09101 Zygosaccharomyces bailii ZBAI_09101 I 0.000