LIN28B (Ochotona princeps)
CSD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00313 (CSD) IPR002059 ENSOPRG00000006333 T164720_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LIN28B
M04663_2.00 		Homo sapiens
CGCGRWRDRRCDGCG
CGCHGYYHYWYCGCG		 SELEX
Yin et al.(2017)
LIN28B_FL_HT-SELEX 		1.000 1.000
LIN28B
M04664_2.00 		Homo sapiens
CGCGRTRNNRCDGCG
CGCHGYNNYAYCGCG		 SELEX
Yin et al.(2017)
LIN28B_FL_Methyl-HT-SELEX 		1.000 1.000
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSOPRP00000005798 CSD 26 98

Links

Other CSD family TFs
Other Ochotona princeps TFs

144 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30174.m008717 Ricinus communis 30174.m008717 I
Aquca_026_00199 Aquilegia coerulea Aquca_026_00199 N
Ciclev10021342m.g Citrus clementina Ciclev10021342m.g I
Eucgr.K02659 Eucalyptus grandis Eucgr.K02659 I
gene26214-v1.0-hybrid Fragaria vesca gene26214-v1.0-hybrid I
GLYMA05G07980 Glycine max GLYMA05G07980 I
Gorai.006G063000 Gossypium raimondii Gorai.006G063000 I
mgf017230m Mimulus guttatus mgf017230m N
scaffold_104540.1 Arabidopsis lyrata scaffold_104540.1 I
Solyc03g119740.2 Solanum lycopersicum Solyc03g119740.2 I
TCM_012262 Theobroma cacao TCM_012262 I
VIT_17s0000g04130 Vitis vinifera VIT_17s0000g04130 I