ENSSSCG00000012830 (Sus scrofa)
CSD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00313 (CSD) IPR002059 ENSSSCG00000012830 T164791_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
YBX1
M04661_2.00 		Homo sapiens
GRTGGWACR
YGTWCCAYC		 SELEX
Yin et al.(2017)
YBX1_eDBD_HT-SELEX 		0.857 0.857
YBX1
M10411_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$YB1_Q3 		0.857 0.857
YBX1
M10412_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$YB1_Q4 		0.857 0.857
YBX1
M04662_2.00 		Homo sapiens
GRTGKDRCD
HGYHMCAYC		 SELEX
Yin et al.(2017)
YBX1_eDBD_Methyl-HT-SELEX 		0.857 0.857
NEMVEDRAFT_v1g104083
M01207_2.00 		Nematostella vectensis
NNNDDHRN
NYDHHNNN		 PBM
Lambert et al.(2019)
pTH9768 		0.714 0.714
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSSSCP00000013639 CSD 53 119

Links

Other CSD family TFs
Other Sus scrofa TFs

228 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAH42217 Xenopus laevis AAH42217 I 0.857
AAI30161 Xenopus laevis AAI30161 I 0.857
Aan_R001440 Calypte anna Aan_R001440 I 0.857
Aan_R014295 Calypte anna Aan_R014295 I 0.857
ACYPI003867 Acyrthosiphon pisum ACYPI003867 I 0.762
Afo_R014263 Aptenodytes forsteri Afo_R014263 I 0.857
Alligator_sinensis_CCG003309.1 Alligator sinensis Alligator_sinensis_CCG003309.1 I 0.714
Alligator_sinensis_CCG005029.1 Alligator sinensis Alligator_sinensis_CCG005029.1 I 0.841
Alligator_sinensis_CCG014301.1 Alligator sinensis Alligator_sinensis_CCG014301.1 I 0.821
ALUE_0000394301 Ascaris lumbricoides ALUE_0000394301 I 0.730
ASIM_0001243501 Anisakis simplex ASIM_0001243501 I 0.730
ASU_11432 Ascaris suum ASU_11432 I 0.730
BGLB002206 Biomphalaria glabrata BGLB002206 I 0.762
Bm3781 Brugia malayi Bm3781 I 0.730
Brh_R007443 Buceros rhinoceros Brh_R007443 I 0.857
CAA42778 Xenopus laevis CAA42778 I 0.857
CapteG166603 Capitella teleta CapteG166603 I 0.762
CapteG50882 Capitella teleta CapteG50882 I 0.714
CGI_10014112 Crassostrea gigas CGI_10014112 I 0.762
D918_04890 Trichuris suis D918_04890 I 0.714
DAPPUDRAFT_311200 Daphnia pulex DAPPUDRAFT_311200 I 0.730
DME_0000984901 Dracunculus medinensis DME_0000984901 I 0.730
EEL_0000726801 Elaeophora elaphi EEL_0000726801 I 0.730
ENSAMEG00000000494 Ailuropoda melanoleuca ENSAMEG00000000494 I 0.857
ENSAMEG00000009393 Ailuropoda melanoleuca ENSAMEG00000009393 I 0.857
ENSAMEG00000016564 Ailuropoda melanoleuca ENSAMEG00000016564 I 0.841
ENSAMEG00000018423 Ailuropoda melanoleuca ENSAMEG00000018423 I 0.794
ENSAMXG00000007090 Astyanax mexicanus ENSAMXG00000007090 I 0.794
ENSAMXG00000014478 Astyanax mexicanus ENSAMXG00000014478 I 0.857
ENSAPLG00000003147 Anas platyrhynchos ENSAPLG00000003147 I 0.857
ENSAPLG00000004899 Anas platyrhynchos ENSAPLG00000004899 I 0.841
YBX2 Bos taurus ENSBTAG00000009126 I 0.841
YBX3 Bos taurus ENSBTAG00000009663 I 0.857
YBX1 Bos taurus ENSBTAG00000017368 I 0.857
ENSBTAP00000012735-D1 Bos grunniens ENSBTAP00000012735-D1 I 0.857
YBX1 Canis familiaris ENSCAFG00000002541 I 0.857
ENSCAFG00000005471 Canis familiaris ENSCAFG00000005471 I 0.714
YBX3 Canis familiaris ENSCAFG00000013401 I 0.857
ENSCAFG00000016128 Canis familiaris ENSCAFG00000016128 I 0.841
ENSCAFG00000017286 Canis familiaris ENSCAFG00000017286 I 0.841
ENSCAFG00000030502 Canis familiaris ENSCAFG00000030502 I 0.810
YBX3 Choloepus hoffmanni ENSCHOG00000011988 I 0.857
ENSCING00000010654 Ciona intestinalis ENSCING00000010654 I 0.746
ENSCJAG00000003155 Callithrix jacchus ENSCJAG00000003155 I 0.857
ENSCJAG00000007407 Callithrix jacchus ENSCJAG00000007407 I 0.778
ENSCJAG00000010572 Callithrix jacchus ENSCJAG00000010572 I 0.873
YBX2 Callithrix jacchus ENSCJAG00000016581 I 0.841
ENSCJAG00000018832 Callithrix jacchus ENSCJAG00000018832 I 0.794
ENSCJAG00000021660 Callithrix jacchus ENSCJAG00000021660 I 0.857
ENSCJAG00000031567 Callithrix jacchus ENSCJAG00000031567 I 0.841
ENSCJAG00000031891 Callithrix jacchus ENSCJAG00000031891 I 0.778
ENSCJAG00000032211 Callithrix jacchus ENSCJAG00000032211 I 0.810
ENSCJAG00000033824 Callithrix jacchus ENSCJAG00000033824 I 0.778
ENSCJAG00000035120 Callithrix jacchus ENSCJAG00000035120 I 0.778
ENSCJAG00000035469 Callithrix jacchus ENSCJAG00000035469 I 0.778
YBX2 Cavia porcellus ENSCPOG00000009543 I 0.841
YBX1 Cavia porcellus ENSCPOG00000010888 I 0.857
YBX3 Cavia porcellus ENSCPOG00000011329 I 0.857
ENSCSAG00000008744 Chlorocebus sabaeus ENSCSAG00000008744 I 0.857
ENSCSAG00000011857 Chlorocebus sabaeus ENSCSAG00000011857 I 0.841
ENSCSAVG00000003053 Ciona savignyi ENSCSAVG00000003053 I 0.762
ybx1 Danio rerio ENSDARG00000004757 I 0.857
YBX2 Dasypus novemcinctus ENSDNOG00000013746 I 0.841
Ybx3 Dipodomys ordii ENSDORG00000009103 I 0.857
Ybx2 Dipodomys ordii ENSDORG00000010882 I 0.714
ENSECAG00000008961 Equus caballus ENSECAG00000008961 I 0.857
YBX2 Equus caballus ENSECAG00000009996 I 0.841
ENSECAG00000011356 Equus caballus ENSECAG00000011356 I 0.873
YBX3 Equus caballus ENSECAG00000013777 I 0.857
ENSECAG00000023592 Equus caballus ENSECAG00000023592 I 0.857
YBX1 Erinaceus europaeus ENSEEUG00000005657 I 0.857
ENSEEUG00000007494 Erinaceus europaeus ENSEEUG00000007494 I 0.825
YBX3 Erinaceus europaeus ENSEEUG00000010415 I 0.857
YBX3 Echinops telfairi ENSETEG00000002557 I 0.857
YBX2 Echinops telfairi ENSETEG00000014271 I 0.714
ENSFALG00000003661 Ficedula albicollis ENSFALG00000003661 I 0.857
YBX2 Felis catus ENSFCAG00000018097 I 0.841
YBX3 Felis catus ENSFCAG00000027748 I 0.857
YBX2 Homo sapiens ENSG00000006047 I 0.825
YBX3 Homo sapiens ENSG00000060138 I 0.857
YBX1 Homo sapiens ENSG00000065978 D 0.857
ybx1 Gasterosteus aculeatus ENSGACG00000006447 I 0.857
YBX2 Gasterosteus aculeatus ENSGACG00000019392 I 0.778
YBX1 Gallus gallus ENSGALG00000004848 I 0.857
ENSGALG00000018512 Gallus gallus ENSGALG00000018512 I 0.857
YBX3 Gorilla gorilla ENSGGOG00000001352 I 0.857
ENSGGOG00000004758 Gorilla gorilla ENSGGOG00000004758 I 0.714
YBX2 Gorilla gorilla ENSGGOG00000007399 I 0.825
ENSGGOG00000023581 Gorilla gorilla ENSGGOG00000023581 I 0.773
ENSGMOG00000007765 Gadus morhua ENSGMOG00000007765 I 0.778
ENSGMOG00000015216 Gadus morhua ENSGMOG00000015216 I 0.825
ENSLACG00000018135 Latimeria chalumnae ENSLACG00000018135 I 0.857
ENSLAFG00000007597 Loxodonta africana ENSLAFG00000007597 I 0.857
YBX2 Loxodonta africana ENSLAFG00000014006 I 0.841
YBX3 Loxodonta africana ENSLAFG00000017247 I 0.857
ENSLOCG00000002530 Lepisosteus oculatus ENSLOCG00000002530 I 0.857
ENSLOCG00000013819 Lepisosteus oculatus ENSLOCG00000013819 I 0.825
YBX1 Meleagris gallopavo ENSMGAG00000006879 I 0.857
YBX3 Meleagris gallopavo ENSMGAG00000014224 I 0.857
ENSMICG00000004602 Microcebus murinus ENSMICG00000004602 I 0.730
ENSMICG00000014984 Microcebus murinus ENSMICG00000014984 I 0.857
ENSMMUG00000013136 Macaca mulatta ENSMMUG00000013136 I 0.857
YBX3 Macaca mulatta ENSMMUG00000022469 I 0.857
ENSMMUG00000022712 Macaca mulatta ENSMMUG00000022712 I 0.841
ENSMMUG00000032563 Macaca mulatta ENSMMUG00000032563 I 0.857
ENSMMUP00000017257 Macaca fascicularis ENSMMUP00000017257 I 0.803
YBX1 Monodelphis domestica ENSMODG00000017214 I 0.857
YBX2 Monodelphis domestica ENSMODG00000017596 I 0.825
YBX3 Monodelphis domestica ENSMODG00000018248 I 0.841
ENSMODG00000022963 Monodelphis domestica ENSMODG00000022963 I 0.810
ENSMPUG00000013922 Mustela putorius furo ENSMPUG00000013922 I 0.746
Ybx2 Mus musculus ENSMUSG00000018554 I 0.841
Ybx1 Mus musculus ENSMUSG00000028639 I 0.857
Ybx3 Mus musculus ENSMUSG00000030189 I 0.857
ENSNLEG00000008063 Nomascus leucogenys ENSNLEG00000008063 I 0.841
ENSNLEG00000012324 Nomascus leucogenys ENSNLEG00000012324 I 0.857
ENSOANG00000001663 Ornithorhynchus anatinus ENSOANG00000001663 I 0.857
YBX1 Ornithorhynchus anatinus ENSOANG00000011725 I 0.857
ENSOARG00000011562 Ovis aries ENSOARG00000011562 I 0.841
ENSOARG00000020447 Ovis aries ENSOARG00000020447 I 0.857
ENSOARG00000020919 Ovis aries ENSOARG00000020919 I 0.857
YBX2 Otolemur garnettii ENSOGAG00000004392 I 0.841
YBX1 Otolemur garnettii ENSOGAG00000006784 I 0.857
YBX3 Otolemur garnettii ENSOGAG00000013245 I 0.810
ENSOGAG00000014939 Otolemur garnettii ENSOGAG00000014939 I 0.778
ENSOGAG00000027853 Otolemur garnettii ENSOGAG00000027853 I 0.714
ENSOGAG00000030360 Otolemur garnettii ENSOGAG00000030360 I 0.730
ENSOGAG00000030653 Otolemur garnettii ENSOGAG00000030653 I 0.762
ENSOGAG00000032929 Otolemur garnettii ENSOGAG00000032929 I 0.746
ENSOGAG00000034677 Otolemur garnettii ENSOGAG00000034677 I 0.730
ENSONIG00000002062 Oreochromis niloticus ENSONIG00000002062 I 0.857
ENSONIG00000018954 Oreochromis niloticus ENSONIG00000018954 I 0.762
YBX2 Ochotona princeps ENSOPRG00000013773 I 0.841
ybx1 Oryzias latipes ENSORLG00000004225 I 0.857
ENSORLG00000006269 Oryzias latipes ENSORLG00000006269 I 0.778
ENSP00000007699-D1 Bos grunniens ENSP00000007699-D1 I 0.841
ENSP00000228251 Macaca fascicularis ENSP00000228251 I 0.857
ENSPANG00000005177 Papio anubis ENSPANG00000005177 I 0.825
ENSPANG00000010280 Papio anubis ENSPANG00000010280 I 0.857
ENSPANG00000013156 Papio anubis ENSPANG00000013156 I 0.857
ENSPANG00000016576 Papio anubis ENSPANG00000016576 I 0.857
ENSPANG00000019627 Papio anubis ENSPANG00000019627 I 0.825
ENSPANG00000024250 Papio anubis ENSPANG00000024250 I 0.841
YBX3 Procavia capensis ENSPCAG00000001397 I 0.841
YBX2 Procavia capensis ENSPCAG00000008019 I 0.841
ENSPFOG00000007181 Poecilia formosa ENSPFOG00000007181 I 0.778
ENSPFOG00000011441 Poecilia formosa ENSPFOG00000011441 I 0.857
ENSPPYG00000004279 Pongo abelii ENSPPYG00000004279 I 0.857
ENSPSIG00000009247 Pelodiscus sinensis ENSPSIG00000009247 I 0.857
ENSPSIG00000009540 Pelodiscus sinensis ENSPSIG00000009540 I 0.714
ENSPSIG00000011017 Pelodiscus sinensis ENSPSIG00000011017 I 0.857
ENSPSIG00000012364 Pelodiscus sinensis ENSPSIG00000012364 I 0.841
YBX1 Pan troglodytes ENSPTRG00000006456 I 0.825
YBX2 Pan troglodytes ENSPTRG00000008673 I 0.825
YBX1 Pteropus vampyrus ENSPVAG00000005504 I 0.857
YBX3 Pteropus vampyrus ENSPVAG00000006740 I 0.857
Ybx3 Rattus norvegicus ENSRNOG00000005480 I 0.857
Ybx2 Rattus norvegicus ENSRNOG00000017117 I 0.841
Ybx1 Rattus norvegicus ENSRNOG00000023786 I 0.857
LOC100912427 Rattus norvegicus ENSRNOG00000032902 I 0.794
YBX2 Sorex araneus ENSSARG00000000488 I 0.825
ENSSHAG00000003262 Sarcophilus harrisii ENSSHAG00000003262 I 0.841
ENSSHAG00000011350 Sarcophilus harrisii ENSSHAG00000011350 I 0.810
ENSSHAG00000014452 Sarcophilus harrisii ENSSHAG00000014452 I 0.857
YBX3 Sus scrofa ENSSSCG00000000633 I 0.857
ENSSSCG00000008860 Sus scrofa ENSSSCG00000008860 I 0.794
ENSSSCG00000015308 Sus scrofa ENSSSCG00000015308 I 0.778
YBX2 Sus scrofa ENSSSCG00000017938 I 0.841
ENSSSCG00000030357 Sus scrofa ENSSSCG00000030357 I 0.841
ENSSTOG00000008630 Ictidomys tridecemlineatus ENSSTOG00000008630 I 0.841
YBX2 Tupaia belangeri ENSTBEG00000001266 I 0.841
YBX3 Tupaia belangeri ENSTBEG00000012570 I 0.857
YBX3 Taeniopygia guttata ENSTGUG00000012047 I 0.857
YBX1 Taeniopygia guttata ENSTGUG00000017262 I 0.857
YBX2 Tetraodon nigroviridis ENSTNIG00000010139 I 0.762
ybx1 Tetraodon nigroviridis ENSTNIG00000011989 I 0.857
ENSTRUG00000011813 Takifugu rubripes ENSTRUG00000011813 I 0.762
ybx1 Takifugu rubripes ENSTRUG00000015333 I 0.857
YBX1 Tursiops truncatus ENSTTRG00000001353 I 0.762
YBX2 Tursiops truncatus ENSTTRG00000009780 I 0.714
YBX1 Vicugna pacos ENSVPAG00000000068 I 0.857
YBX3 Vicugna pacos ENSVPAG00000000876 I 0.730
ENSXMAG00000015755 Xiphophorus maculatus ENSXMAG00000015755 I 0.778
ENSXMAG00000018674 Xiphophorus maculatus ENSXMAG00000018674 I 0.857
EVEC_0000436301 Enterobius vermicularis EVEC_0000436301 I 0.714
e_gw.440.24.1 Branchiostoma floridae e_gw.440.24.1 I 0.810
GF10852 Drosophila ananassae FBgn0087892 I 0.714
GL15684 Drosophila persimilis FBgn0153288 I 0.714
GK16710 Drosophila willistoni FBgn0218712 I 0.714
GA23502 Drosophila pseudoobscura FBgn0244903 I 0.714
GB54355 Apis mellifera GB54355 I 0.730
Gfo_R007354 Geospiza fortis Gfo_R007354 I 0.857
GPUH_0001124501 Gongylonema pulchrum GPUH_0001124501 I 0.730
Hsal_07052--XP_393344.3_APIME Harpegnathos saltator Hsal_07052--XP_393344.3_APIME I 0.714
ISCW005281 Ixodes scapularis ISCW005281 I 0.778
LCUP004743 Lucilia cuprina LCUP004743 I 0.714
LDEC002142 Leptinotarsa decemlineata LDEC002142 I 0.714
LOAG_17966 Loa loa LOAG_17966 I 0.730
LotgiG78612 Lottia gigantea LotgiG78612 I 0.778
nAv.1.0.1.g07732 Acanthocheilonema viteae nAv.1.0.1.g07732 I 0.730
nDi.2.2.2.g07679 Dirofilaria immitis nDi.2.2.2.g07679 I 0.730
nLs.2.1.2.g03745 Litomosoides sigmodontis nLs.2.1.2.g03745 I 0.730
nOo.2.0.1.g01690 Onchocerca ochengi nOo.2.0.1.g01690 I 0.730
nRc.2.0.1.g10725 Romanomermis culicivorax nRc.2.0.1.g10725 I 0.714
Ocbimv22002282m.g Octopus bimaculoides Ocbimv22002282m.g I 0.762
Ogr10632 Ophisaurus gracilis Ogr10632 I 0.825
PHUM156710 Pediculus humanus PHUM156710 I 0.730
PHUM156720 Pediculus humanus PHUM156720 I 0.714
Pvit_10025 Pogona vitticeps Pvit_10025 I 0.857
Sakowv30002198m.g Saccoglossus kowalevskii Sakowv30002198m.g I 0.810
SMU15014702 Schmidtea mediterranea SMU15014702 I 0.730
SNAPOd2T00011389001 Oikopleura dioica SNAPOd2T00011389001 I 0.714
TC013925 Tribolium castaneum TC013925 I 0.714
TCLT_0000736301 Thelazia callipaeda TCLT_0000736301 I 0.714
TCNE_0001642201 Toxocara canis TCNE_0001642201 I 0.730
TMUE_s0011007500 Trichuris muris TMUE_s0011007500 I 0.714
TTRE_0000405201 Trichuris trichiura TTRE_0000405201 I 0.714
WBGene00247949 Onchocerca volvulus WBGene00247949 I 0.714
WUBG_03960 Wuchereria bancrofti WUBG_03960 I 0.730
ybx3 Xenopus tropicalis XB-GENE-1007558 I 0.810
ybx1 Xenopus tropicalis XB-GENE-480746 I 0.857
ybx2 Xenopus tropicalis XB-GENE-5798907 I 0.825
ybx2.L Xenopus laevis XB-GENE-6252609 I 0.841
ybx2.S Xenopus laevis XB-GENE-6254213 I 0.825
ybx1.S Xenopus laevis XB-GENE-865405 I 0.857
XP_002154000.1 Hydra magnipapillata XP_002154000.1 I 0.762
XP_002159745.1 Hydra magnipapillata XP_002159745.1 I 0.762
YQE_07192 Dendroctonus ponderosae YQE_07192 I 0.746