YBX1 (Taeniopygia guttata)
CSD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00313 (CSD) IPR002059 ENSTGUG00000017262 T164813_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
YBX1
M04661_2.00 		Homo sapiens
GRTGGWACR
YGTWCCAYC		 SELEX
Yin et al.(2017)
YBX1_eDBD_HT-SELEX 		1.000 1.000
YBX1
M10411_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$YB1_Q3 		1.000 1.000
YBX1
M10412_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$YB1_Q4 		1.000 1.000
YBX1
M04662_2.00 		Homo sapiens
GRTGKDRCD
HGYHMCAYC		 SELEX
Yin et al.(2017)
YBX1_eDBD_Methyl-HT-SELEX 		1.000 1.000
NEMVEDRAFT_v1g104083
M01207_2.00 		Nematostella vectensis
NNNDDHRN
NYDHHNNN		 PBM
Lambert et al.(2019)
pTH9768 		0.818 0.818
cey-1
M01903_2.00 		Caenorhabditis elegans
NNNGRTRDD
HHYAYCNNN		 PBM
Weirauch et al.(2014)
pTH8991 		0.773 0.773
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTGUP00000017543 CSD 56 125

Links

Other CSD family TFs
Other Taeniopygia guttata TFs

411 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL004428 Aedes aegypti AAEL004428 I 0.000
AALB004585 Anopheles albimanus AALB004585 I 0.000
Aan_R014318 Calypte anna Aan_R014318 I 0.000
AARA003512 Anopheles arabiensis AARA003512 I 0.000
AATE010880 Anopheles atroparvus AATE010880 I 0.000
ACEP10202 Atta cephalotes ACEP10202 I 0.000
ACOM036372 Anopheles coluzzii ACOM036372 I 0.000
ACUA009159 Anopheles culicifacies ACUA009159 I 0.000
ACUA026679 Anopheles culicifacies ACUA026679 I 0.000
ACYPI007008 Acyrthosiphon pisum ACYPI007008 I 0.000
ADAC006978 Anopheles darlingi ADAC006978 I 0.000
ADIR001683 Anopheles dirus ADIR001683 I 0.000
AEPI011485 Anopheles epiroticus AEPI011485 I 0.000
AFAF009162 Anopheles farauti AFAF009162 I 0.000
AFUN005050 Anopheles funestus AFUN005050 I 0.000
AGAP004907 Anopheles gambiae AGAP004907 I 0.000
Alligator_sinensis_CCG011163.1 Alligator sinensis Alligator_sinensis_CCG011163.1 I 0.000
Alligator_sinensis_CCG018876.1 Alligator sinensis Alligator_sinensis_CCG018876.1 I 0.000
AMAM022568 Anopheles maculatus AMAM022568 I 0.000
AMEC009920 Anopheles melas AMEC009920 I 0.000
AMEM004741 Anopheles merus AMEM004741 I 0.000
AMIN011405 Anopheles minimus AMIN011405 I 0.000
AQUA014034 Anopheles quadriannulatus AQUA014034 I 0.000
ASTEI10641 Anopheles stephensi ASTEI10641 I 0.000
BGIBMGA008476 Bombyx mori BGIBMGA008476 I 0.000
BGLB013717 Biomphalaria glabrata BGLB013717 I 0.000
Brh_R005283 Buceros rhinoceros Brh_R005283 I 0.000
BXY_0231500 Bursaphelenchus xylophilus BXY_0231500 I 0.000
CapteG162858 Capitella teleta CapteG162858 I 0.000
Cflo_11933--XP_001122281.1_APIME Camponotus floridanus Cflo_11933--XP_001122281.1_APIME I 0.000
CGI_10002829 Crassostrea gigas CGI_10002829 I 0.000
CLEC002464 Cimex lectularius CLEC002464 I 0.000
Cmyd_10001044 Chelonia mydas Cmyd_10001044 I 0.000
Cmyd_10010324 Chelonia mydas Cmyd_10010324 I 0.000
Cmyd_10014342 Chelonia mydas Cmyd_10014342 I 0.000
DAPPUDRAFT_66944 Daphnia pulex DAPPUDRAFT_66944 I 0.000
NHLH2 Anolis carolinensis ENSACAG00000003304 I 0.000
ENSACAG00000010649 Anolis carolinensis ENSACAG00000010649 I 0.000
ENSAMEG00000010851 Ailuropoda melanoleuca ENSAMEG00000010851 I 0.000
ENSAMXG00000026006 Astyanax mexicanus ENSAMXG00000026006 I 0.000
NHLH2 Bos taurus ENSBTAG00000015067 I 0.000
NHLH1 Bos taurus ENSBTAG00000020027 I 0.000
NHLH2 Canis familiaris ENSCAFG00000009767 I 0.000
NHLH1 Canis familiaris ENSCAFG00000023513 I 0.000
NHLH1 Callithrix jacchus ENSCJAG00000005775 I 0.000
NHLH2 Callithrix jacchus ENSCJAG00000012807 I 0.000
NHLH1 Cavia porcellus ENSCPOG00000021596 I 0.000
NHLH2 Cavia porcellus ENSCPOG00000026593 I 0.000
ENSCSAG00000000087 Chlorocebus sabaeus ENSCSAG00000000087 I 0.000
ENSCSAG00000000172 Chlorocebus sabaeus ENSCSAG00000000172 I 0.000
nhlh2 Danio rerio ENSDARG00000025495 I 0.000
NHLH2 Dasypus novemcinctus ENSDNOG00000008961 I 0.000
NHLH1 Dasypus novemcinctus ENSDNOG00000038600 I 0.000
NHLH1 Equus caballus ENSECAG00000004612 I 0.000
NHLH1 Echinops telfairi ENSETEG00000009677 I 0.000
ENSFALG00000006103 Ficedula albicollis ENSFALG00000006103 I 0.000
ENSFCAG00000028313 Felis catus ENSFCAG00000028313 I 0.000
NHLH1 Homo sapiens ENSG00000171786 D 0.000
NHLH2 Homo sapiens ENSG00000177551 D 0.000
nhlh2 Gasterosteus aculeatus ENSGACG00000014053 I 0.000
NHLH1 Gallus gallus ENSGALG00000025817 I 0.000
NHLH2 Gorilla gorilla ENSGGOG00000008283 I 0.000
NHLH1 Gorilla gorilla ENSGGOG00000015736 I 0.000
ENSGMOG00000020309 Gadus morhua ENSGMOG00000020309 I 0.000
ENSLACG00000011363 Latimeria chalumnae ENSLACG00000011363 I 0.000
NHLH2 Loxodonta africana ENSLAFG00000007456 I 0.000
NHLH1 Loxodonta africana ENSLAFG00000011163 I 0.000
ENSLOCG00000017787 Lepisosteus oculatus ENSLOCG00000017787 I 0.000
ENSMEUG00000003022 Macropus eugenii ENSMEUG00000003022 I 0.000
ENSMGAG00000016096 Meleagris gallopavo ENSMGAG00000016096 I 0.000
ENSMICG00000002851 Microcebus murinus ENSMICG00000002851 I 0.000
NHLH1 Microcebus murinus ENSMICG00000012700 I 0.000
NHLH2 Myotis lucifugus ENSMLUG00000015989 I 0.000
ENSMMUG00000008971 Macaca mulatta ENSMMUG00000008971 I 0.000
NHLH1 Macaca mulatta ENSMMUG00000021865 I 0.000
NHLH2 Monodelphis domestica ENSMODG00000023228 I 0.000
NHLH1 Monodelphis domestica ENSMODG00000024591 I 0.000
ENSMPUG00000019387 Mustela putorius furo ENSMPUG00000019387 I 0.000
ENSMPUG00000019473 Mustela putorius furo ENSMPUG00000019473 I 0.000
Nhlh2 Mus musculus ENSMUSG00000048540 D 0.000
Nhlh1 Mus musculus ENSMUSG00000051251 D 0.000
ENSNLEG00000013637 Nomascus leucogenys ENSNLEG00000013637 I 0.000
NHLH2 Ornithorhynchus anatinus ENSOANG00000009820 I 0.000
NHLH2 Oryctolagus cuniculus ENSOCUG00000015744 I 0.000
NHLH1 Otolemur garnettii ENSOGAG00000010592 I 0.000
NHLH2 Otolemur garnettii ENSOGAG00000034540 I 0.000
ENSONIG00000020673 Oreochromis niloticus ENSONIG00000020673 I 0.000
ENSONIG00000021015 Oreochromis niloticus ENSONIG00000021015 I 0.000
NHLH2 Ochotona princeps ENSOPRG00000006661 I 0.000
ENSP00000302189 Macaca fascicularis ENSP00000302189 I 0.000
ENSP00000358519-D1 Bos grunniens ENSP00000358519-D1 I 0.000
ENSP00000405915 Macaca fascicularis ENSP00000405915 I 0.000
ENSPANG00000001481 Papio anubis ENSPANG00000001481 I 0.000
ENSPANG00000011970 Papio anubis ENSPANG00000011970 I 0.000
NHLH1 Procavia capensis ENSPCAG00000009061 I 0.000
ENSPFOG00000020651 Poecilia formosa ENSPFOG00000020651 I 0.000
ENSPPYG00000000632 Pongo abelii ENSPPYG00000000632 I 0.000
ENSPPYG00000000988 Pongo abelii ENSPPYG00000000988 I 0.000
NHLH2 Pan troglodytes ENSPTRG00000001149 I 0.000
NHLH1 Pan troglodytes ENSPTRG00000001551 I 0.000
NHLH1 Pteropus vampyrus ENSPVAG00000007987 I 0.000
NHLH2 Pteropus vampyrus ENSPVAG00000012688 I 0.000
Nhlh1 Rattus norvegicus ENSRNOG00000005166 I 0.000
Nhlh2 Rattus norvegicus ENSRNOG00000054375 I 0.000
ENSSHAG00000006613 Sarcophilus harrisii ENSSHAG00000006613 I 0.000
ENSSHAG00000015472 Sarcophilus harrisii ENSSHAG00000015472 I 0.000
NHLH1 Sus scrofa ENSSSCG00000006384 I 0.000
NHLH2 Sus scrofa ENSSSCG00000006744 I 0.000
ENSSTOG00000019698 Ictidomys tridecemlineatus ENSSTOG00000019698 I 0.000
ENSSTOG00000027988 Ictidomys tridecemlineatus ENSSTOG00000027988 I 0.000
NHLH1 Taeniopygia guttata ENSTGUG00000013389 I 0.000
nhlh2 Tetraodon nigroviridis ENSTNIG00000010331 I 0.000
nhlh2 Takifugu rubripes ENSTRUG00000003636 I 0.000
ENSTSYG00000000582 Tarsius syrichta ENSTSYG00000000582 I 0.000
NHLH1 Tursiops truncatus ENSTTRG00000001840 I 0.000
NHLH2 Tursiops truncatus ENSTTRG00000003112 I 0.000
ENSXMAG00000020348 Xiphophorus maculatus ENSXMAG00000020348 I 0.000
HLH4C Drosophila melanogaster FBgn0011277 D 0.000
GA15893 Drosophila pseudoobscura FBgn0075909 I 0.000
GF20856 Drosophila ananassae FBgn0097862 I 0.000
GG18528 Drosophila erecta FBgn0110741 I 0.000
GH17630 Drosophila grimshawi FBgn0125100 I 0.000
GI16068 Drosophila mojavensis FBgn0138817 I 0.000
GL14555 Drosophila persimilis FBgn0152160 I 0.000
GM12676 Drosophila sechellia FBgn0167612 I 0.000
GD16284 Drosophila simulans FBgn0187911 I 0.000
GJ15714 Drosophila virilis FBgn0202902 I 0.000
GK16457 Drosophila willistoni FBgn0218459 I 0.000
GE16844 Drosophila yakuba FBgn0234336 I 0.000
GB49291 Apis mellifera GB49291 I 0.000
GB53325 Apis mellifera GB53325 I 0.000
Gfo_R014815 Geospiza fortis Gfo_R014815 I 0.000
HelroG138545 Helobdella robusta HelroG138545 I 0.000
HelroG153470 Helobdella robusta HelroG153470 I 0.000
HelroG94416 Helobdella robusta HelroG94416 I 0.000
HHAL001761-PA Halyomorpha halys HHAL001761-PA I 0.000
HMEL010237 Heliconius melpomene HMEL010237 I 0.000
Hsal_11874--XP_001122281.1_APIME Harpegnathos saltator Hsal_11874--XP_001122281.1_APIME I 0.000
ISCW014797 Ixodes scapularis ISCW014797 I 0.000
KGM_06532 Danaus plexippus KGM_06532 I 0.000
L798_00559 Zootermopsis nevadensis L798_00559 I 0.000
LCUP012274 Lucilia cuprina LCUP012274 I 0.000
LDEC000946 Leptinotarsa decemlineata LDEC000946 I 0.000
LLOJ002704 Lutzomyia longipalpis LLOJ002704 I 0.000
LotgiG133561 Lottia gigantea LotgiG133561 I 0.000
MCINX015834 Melitaea cinxia MCINX015834 I 0.000
MDOA007431 Musca domestica MDOA007431 I 0.000
MDOA013398 Musca domestica MDOA013398 I 0.000
MESCA010279 Megaselia scalaris MESCA010279 I 0.000
nRc.2.0.1.g35713 Romanomermis culicivorax nRc.2.0.1.g35713 I 0.000
NV10733 Nasonia vitripennis NV10733 I 0.000
Ocbimv22001940m.g Octopus bimaculoides Ocbimv22001940m.g I 0.000
Ogr08231 Ophisaurus gracilis Ogr08231 I 0.000
PHUM229200 Pediculus humanus PHUM229200 I 0.000
PPAI007861 Phlebotomus papatasi PPAI007861 I 0.000
Pvit_07565 Pogona vitticeps Pvit_07565 I 0.000
RPRC001173 Rhodnius prolixus RPRC001173 I 0.000
Sakowv30004475m.g Saccoglossus kowalevskii Sakowv30004475m.g I 0.000
SMAR007908 Strigamia maritima SMAR007908 I 0.000
SMU15030866 Schmidtea mediterranea SMU15030866 I 0.000
SPU_009231 Strongylocentrotus purpuratus SPU_009231 I 0.000
TC007725 Tribolium castaneum TC007725 I 0.000
nhlh1.S Xenopus laevis XB-GENE-6252028 I 0.000
nhlh1 Xenopus tropicalis XB-GENE-989790 I 0.000
nhlh1.L Xenopus laevis XB-GENE-989792 I 0.000
YQE_00442 Dendroctonus ponderosae YQE_00442 I 0.000
YQE_04623 Dendroctonus ponderosae YQE_04623 I 0.000
YQE_11502 Dendroctonus ponderosae YQE_11502 I 0.000