CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Ocbimv22004323m.g
(
Octopus bimaculoides
)
CSD
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00313 (CSD)
IPR002059
Ocbimv22004323m.g
T165411_2.00
JGI:Metazome (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
lin-28
M03713_2.00
Drosophila melanogaster
KCGTGTAGGTCGGTGGB
VCCACCGACCTACACGM
SELEX
Nitta et al.(2015)
lin-28_1
0.700
0.700
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Ocbimv22004323m.p
CSD
54
83
KHGGCKWFNVAQGWGFITPDDKSQDVFVHQ
Links
Other
CSD
family TFs
Other
Octopus bimaculoides
TFs
5 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy