fgenesh2_pg.scaffold_82000019 (Branchiostoma floridae)
CSL

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF09271 (LAG1-DNAbind) IPR015351 fgenesh2_pg.scaffold_82000019 T166323_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RBPJ
M00735_2.00 		Homo sapiens
NNNBTCHCAN
NTGDGAVNNN		 PBM
DelBianco et al.(2010)
GST-CSL_Fig2 		0.847 0.847
RBPJ
M00736_2.00 		Homo sapiens
NNNYTCHCAN
NTGDGARNNN		 PBM
DelBianco et al.(2010)
GST-CSL_Fig4 		0.847 0.847
RBPJ
M00737_2.00 		Homo sapiens
NNNBTCHCAN
NTGDGAVNNN		 PBM
DelBianco et al.(2010)
GST-CSL-NOTCH1 		0.847 0.847
RBPJ
M00738_2.00 		Homo sapiens
NBTCHCAN
NTGDGAVN		 PBM
DelBianco et al.(2010)
GST-NOTCH1_CSL-6His_MAML1 		0.847 0.847
RBPJ
M00739_2.00 		Homo sapiens
NNBTCHCAN
NTGDGAVNN		 PBM
DelBianco et al.(2010)
GST-NOTCH1_CSL-6His 		0.847 0.847
RBPJ
M00740_2.00 		Homo sapiens
NNNYTCYCAN
NTGRGARNNN		 PBM
DelBianco et al.(2010)
GST-NOTCH1_Fig2 		0.847 0.847
RBPJ
M00741_2.00 		Homo sapiens
NNNBTCHCAN
NTGDGAVNNN		 PBM
DelBianco et al.(2010)
MAML1-CSL-GST-NOTCH1_Fig2 		0.847 0.847
RBPJ
M00742_2.00 		Homo sapiens
NDYTCHCAB
VTGDGARHN		 PBM
DelBianco et al.(2010)
MAML1-CSL-GST-NOTCH1_Fig5 		0.847 0.847
RBPJ
M08105_2.00 		Homo sapiens
NNTTCCCABN
NVTGGGAANN		 ChIP-seq
Mathelier et al.(2014)
MA1116.1 		0.847 0.847
RBPJ
M09020_2.00 		Homo sapiens
BTTCCCASVVN
NBBSTGGGAAV		 Misc
Kulakovskiy et al.(2013)
SUH_HUMAN.H11MO.0.A 		0.847 0.847
Rbpj
M09021_2.00 		Mus musculus
NBTTCCCASVV
BBSTGGGAAVN		 Misc
Kulakovskiy et al.(2013)
SUH_MOUSE.H11MO.0.A 		0.847 0.847
RBPJ
M10413_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RBPJK_01 		0.847 0.847
RBPJ
M10414_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RBPJK_Q4 		0.847 0.847
Su(H)
M10415_2.00 		Drosophila melanogaster
VGKTTCYCACRVY
RBYGTGRGAAMCB		 Transfac
Matys et al.(2006)
I$SUH_01 		0.771 0.771
Su(H)
M08455_2.00 		Drosophila melanogaster
HBHNVGKTTCYCACRV
BYGTGRGAAMCBNDVD		 COMPILED
Mathelier et al.(2014)
MA0085.1 		0.771 0.771
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_pg.scaffold_82000019 CSL 61 191

Links

Other CSL family TFs
Other Branchiostoma floridae TFs

145 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BBA_01545 Beauveria bassiana BBA_01545 N 0.000
BGHDH14_bgh04116 Blumeria graminis BGHDH14_bgh04116 N 0.000
CADANGAG00002230 Aspergillus niger CADANGAG00002230 N 0.000
CCM_00998 Cordyceps militaris CCM_00998 N 0.000
CGGC5_3996 Colletotrichum gloeosporioides CGGC5_3996 N 0.000
CH063_07308 Colletotrichum higginsianum CH063_07308 N 0.000
Cob_01816 Colletotrichum orbiculare Cob_01816 N 0.000
CPUR_00596 Claviceps purpurea CPUR_00596 N 0.000
CSUB01_04200 Colletotrichum sublineola CSUB01_04200 N 0.000
CTHT_0020070 Chaetomium thermophilum CTHT_0020070 N 0.000
EPUS_07916 Endocarpon pusillum EPUS_07916 N 0.000
estExt_Genewise1.C_90051 Neurospora discreta estExt_Genewise1.C_90051 N 0.000
estExt_Genewise1.C_sca_3_chr4_2_00632 Nectria haematococca estExt_Genewise1.C_sca_3_chr4_2_00632 N 0.000
FFUJ_13265 Fusarium fujikuroi FFUJ_13265 N 0.000
FGRRES_06071 Fusarium graminearum FGRRES_06071 N 0.000
FPSE_04226 Fusarium pseudograminearum FPSE_04226 N 0.000
FVEG_04708 Fusarium verticillioides FVEG_04708 N 0.000
GLRG_10810 Colletotrichum graminicola GLRG_10810 N 0.000
MAC_09480 Metarhizium acridum MAC_09480 N 0.000
MAJ_05808 Metarhizium majus MAJ_05808 N 0.000
MAM_04763 Metarhizium album MAM_04763 N 0.000
MANI_012588 Metarhizium anisopliae MANI_012588 N 0.000
MBR_03064 Metarhizium brunneum MBR_03064 N 0.000
MGU_04765 Metarhizium guizhouense MGU_04765 N 0.000
MPH_12253 Macrophomina phaseolina MPH_12253 N 0.000
MYCTH_2305929 Myceliophthora thermophila MYCTH_2305929 N 0.000
NCAS_0C02550 Naumovozyma castellii NCAS_0C02550 N 0.000
NCU05891 Neurospora crassa NCU05891 N 0.000
NechaG60026 Fusarium solani NechaG60026 N 0.000
NEUTE1DRAFT_86802 Neurospora tetrasperma NEUTE1DRAFT_86802 N 0.000
OCS_06782 Ophiocordyceps sinensis OCS_06782 N 0.000
OIDMADRAFT_162843 Oidiodendron maius OIDMADRAFT_162843 N 0.000
S40285_02142 Stachybotrys chlorohalonata S40285_02142 N 0.000
S40288_01911 Stachybotrys chartarum S40288_01911 N 0.000
Scas_Contig562.2 Saccharomyces castellii Scas_Contig562.2 N 0.000
SMAC_08547 Sordaria macrospora SMAC_08547 N 0.000
THITE_2067650 Thielavia terrestris THITE_2067650 N 0.000
TRIATDRAFT_161664 Trichoderma atroviride TRIATDRAFT_161664 N 0.000
TRIREDRAFT_77609 Trichoderma reesei TRIREDRAFT_77609 N 0.000
TRIVIDRAFT_36951 Trichoderma virens TRIVIDRAFT_36951 N 0.000
UCRPA7_6046 Togninia minima UCRPA7_6046 N 0.000
UREG_07450 Uncinocarpus reesii UREG_07450 N 0.000
UV8b_5421 Ustilaginoidea virens UV8b_5421 N 0.000
VDAG_09953 Verticillium dahliae VDAG_09953 N 0.000
VDBG_03434 Verticillium alfalfae VDBG_03434 N 0.000
VDBG_03434 Verticillium albo atrum VDBG_03434 N 0.000
X797_001129 Metarhizium robertsii X797_001129 N 0.000