CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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estExt_gwp.C_2770046
(
Branchiostoma floridae
)
CxxC
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02008 (zf-CXXC)
IPR002857
estExt_gwp.C_2770046
T168665_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
DNMT1
M01913_2.00
Homo sapiens
NNNNNCGGNN
NNCCGNNNNN
PBM
Weirauch et al.(2014)
pTH7029
0.714
0.714
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_gwp.C_2770046
CxxC
10
44
QVCQQADCGTCVACKDMTKFGGTGKSKQACVNRRC
Links
Other
CxxC
family TFs
Other
Branchiostoma floridae
TFs
4 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
BGLB005557
Biomphalaria glabrata
BGLB005557
I
0.722
DNMT1
Dasypus novemcinctus
ENSDNOG00000003313
I
0.714
e_gw.24.105.1
Branchiostoma floridae
e_gw.24.105.1
I
0.723
NEMVEDRAFT_v1g125496
Nematostella vectensis
NEMVEDRAFT_v1g125496
I
0.714