CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Bra028872 *(Brassica rapa)* Dof
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF02701 (zf-Dof)	IPR003851	Bra028872	T170343_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
DOF5.1 M06863_2.00	Arabidopsis thaliana	HYHYWYHHHYTTWNCTTTTTN	NAAAAAGNWAARDDDRWRDRD	Dap-seq OMalley et al.(2016) AT5G02460_col_a	0.983	0.983
DOF5.1 M06864_2.00	Arabidopsis thaliana	NHDYHRCTTTWTNNHNNHN	NDNNDNNAWAAAGYDRHDN	Dap-seq OMalley et al.(2016) AT5G02460_colamp_a	0.983	0.983
PK23763.1 M01224_2.00	Cannabis sativa	NNNCTTTWN	NWAAAGNNN	PBM Lambert et al.(2019) pTH10194	0.949	0.949
DOF2.2 M06839_2.00	Arabidopsis thaliana	HHHYHHHHYWTYHNCTTTTTN	NAAAAAGNDRAWRDDDDRDDD	Dap-seq OMalley et al.(2016) AT2G28810_col_a	0.915	0.915
DOF2.2 M06840_2.00	Arabidopsis thaliana	NYHNCTTTWTNNNHH	DDNNNAWAAAGNDRN	Dap-seq OMalley et al.(2016) AT2G28810_colamp_a	0.915	0.915
DOF2.4 M01940_2.00	Arabidopsis thaliana	NCKTTWN	NWAAMGN	PBM Weirauch et al.(2014) pTH7912	0.898	0.898
PK03929.1 M01214_2.00	Cannabis sativa	NNNCTTTWNN	NNWAAAGNNN	PBM Lambert et al.(2019) pTH10165	0.898	0.898
DOF2.4 M06841_2.00	Arabidopsis thaliana	HHWWTTHMCTTTTTN	NAAAAAGKDAAWWDD	Dap-seq OMalley et al.(2016) dof24_col_a	0.898	0.898
DOF2.4 M06842_2.00	Arabidopsis thaliana	HHMCTTTWTNNNNHN	NDNNNNAWAAAGKDD	Dap-seq OMalley et al.(2016) dof24_colamp_a	0.898	0.898
PK15337.1 M01219_2.00	Cannabis sativa	NCTTTHN	NDAAAGN	PBM Lambert et al.(2019) pTH10186	0.864	0.864
OBP3 M06854_2.00	Arabidopsis thaliana	BTHWCTTTTYNHYTTYWYYHH	DDRRWRAARDNRAAAAGWDAV	Dap-seq OMalley et al.(2016) OBP3_col_a	0.864	0.864
OBP3 M06855_2.00	Arabidopsis thaliana	NHNWHNHHNYWNCTTTTYN	NRAAAAGNWRNDDNDWNDN	Dap-seq OMalley et al.(2016) OBP3_colamp_a	0.864	0.864
Dof3 M02676_2.00	Zea mays	BRCTTT	AAAGYV	SELEX Mathelier et al.(2014) MA0021.1	0.831	0.831
Dof3 M10439_2.00	Zea mays	NBNCTTTNNBN	NVNNAAAGNVN	Transfac Matys et al.(2006) P$DOF3_01	0.831	0.831
DOF5.3 M01947_2.00	Arabidopsis thaliana	CKTTNNN	NNNAAMG	PBM Weirauch et al.(2014) pTH7182	0.797	0.797
PK05671.1 M01215_2.00	Cannabis sativa	NCDWWNNN	NNNWWHGN	PBM Lambert et al.(2019) pTH10101	0.797	0.797
PK10955.1 M01217_2.00	Cannabis sativa	VCTTTWNN	NNWAAAGB	PBM Lambert et al.(2019) pTH10264	0.797	0.797
PK14080.1 M01218_2.00	Cannabis sativa	NCDTTHNN	NNDAAHGN	PBM Lambert et al.(2019) pTH10123	0.797	0.797
DOF3.1 M01942_2.00	Arabidopsis thaliana	NCKTTNNN	NNNAAMGN	PBM Weirauch et al.(2014) pTH8190	0.763	0.763
DOF5.4 M01948_2.00	Arabidopsis thaliana	NDCGTTAWCN	NGWTAACGHN	PBM Weirauch et al.(2014) pTH7160	0.763	0.763
DOF5.4 M01949_2.00	Arabidopsis thaliana	NWACGTTWHNN	NNDWAACGTWN	PBM Weirauch et al.(2014) pTH7535	0.763	0.763
e_gw1.170.52.1 M01952_2.00	Physcomitrella patens	NNNCTTTHNN	NNDAAAGNNN	PBM Weirauch et al.(2014) pTH8464	0.763	0.763
PK20555.1 M01222_2.00	Cannabis sativa	NNNCTTTWNN	NNWAAAGNNN	PBM Lambert et al.(2019) pTH10144	0.763	0.763
DOF5.4 M06865_2.00	Arabidopsis thaliana	DNWNYHMCTTTTTN	NAAAAAGKDRNWNH	Dap-seq OMalley et al.(2016) OBP4_col_a	0.763	0.763
DOF5.4 M06866_2.00	Arabidopsis thaliana	HWDYHVCTTTTTNNNHHNH	DNDDNNNAAAAAGBDRHWD	Dap-seq OMalley et al.(2016) OBP4_colamp_a	0.763	0.763
DOF5.7 M00862_2.00	Arabidopsis thaliana	NNNCKTTN	NAAMGNNN	PBM Franco-Zorrilla et al.(2014) Dof5.7	0.746	0.746
gw1.12.257.1 M01955_2.00	Physcomitrella patens	NNDDNNN	NNNHHNN	PBM Weirauch et al.(2014) pTH8651	0.746	0.746
PBF M02675_2.00	Zea mays	RCTTT	AAAGY	SELEX Mathelier et al.(2014) MA0064.1	0.746	0.746
PBF M10438_2.00	Zea mays	BBDCTTTWNWD	HWNWAAAGHVV	Transfac Matys et al.(2006) P$PBF_01	0.746	0.746
DOF1.8 M01939_2.00	Arabidopsis thaliana	NNNCKTTHNN	NNDAAMGNNN	PBM Weirauch et al.(2014) pTH7256	0.729	0.729
DOF1.8 M01062_2.00	Arabidopsis thaliana	NHVCTTTWH	DWAAAGBDN	PBM Sullivan et al.(2014) pTH7653	0.729	0.729
DOF2.5 M01212_2.00	Arabidopsis thaliana	NNNCKTTWNN	NNWAAMGNNN	PBM Lambert et al.(2019) pTH11562	0.729	0.729
PK01144.1 M01213_2.00	Cannabis sativa	NCTTTWN	NWAAAGN	PBM Lambert et al.(2019) pTH10160	0.729	0.729
PK07031.1 M01216_2.00	Cannabis sativa	NCKTTHN	NDAAMGN	PBM Lambert et al.(2019) pTH11435	0.729	0.729
PK20317.1 M01221_2.00	Cannabis sativa	CKTTWNN	NNWAAMG	PBM Lambert et al.(2019) pTH11298	0.729	0.729
DOF1.7 M06833_2.00	Arabidopsis thaliana	HNNHWTYWNCTTTTYNHNHHN	NDDNDNRAAAAGNWRAWDNND	Dap-seq OMalley et al.(2016) Adof1_col_a	0.729	0.729
DOF1.7 M06834_2.00	Arabidopsis thaliana	NNHNNYWRCTTTTTNNHHNNH	DNNDDNNAAAAAGYWRNNDNN	Dap-seq OMalley et al.(2016) Adof1_colamp_a	0.729	0.729
DOF1.8 M06835_2.00	Arabidopsis thaliana	WWWYHMCTTTTTNNNHNHW	WDNDNNNAAAAAGKDRWWW	Dap-seq OMalley et al.(2016) At1g64620_100ng20cy_b	0.729	0.729
DOF1.8 M06836_2.00	Arabidopsis thaliana	NHHMCTTTTTN	NAAAAAGKDDN	Dap-seq OMalley et al.(2016) At1g64620_colamp_a	0.729	0.729
DOF2.5 M06843_2.00	Arabidopsis thaliana	DYHMCTTTTTN	NAAAAAGKDRH	Dap-seq OMalley et al.(2016) DAG2_col_a	0.729	0.729
DOF2.5 M06844_2.00	Arabidopsis thaliana	HWDYHMCTTTTTN	NAAAAAGKDRHWD	Dap-seq OMalley et al.(2016) DAG2_colamp_a	0.729	0.729
AT3G52440 M06852_2.00	Arabidopsis thaliana	DYHMCTTTWTN	NAWAAAGKDRH	Dap-seq OMalley et al.(2016) AT3G52440_col_a	0.712	0.712
AT3G52440 M06853_2.00	Arabidopsis thaliana	WWDDYHMCTTTTTNNHHYYWW	WWRRDDNNAAAAAGKDRHHWW	Dap-seq OMalley et al.(2016) AT3G52440_colamp_a	0.712	0.712
DOF3.4 M06851_2.00	Arabidopsis thaliana	NNNHYHYHHHWYYHNCTTTWB	VWAAAGNDRRWDDDRDRDNNN	Dap-seq OMalley et al.(2016) OBP1_col_a	0.712	0.712
DOF3.2 M01943_2.00	Arabidopsis thaliana	NHDNNNNN	NNNNNHDN	PBM Weirauch et al.(2014) pTH7183	0.695	0.695
DOF4.7 M01945_2.00	Arabidopsis thaliana	NCKTTHNNN	NNNDAAMGN	PBM Weirauch et al.(2014) pTH7189	0.695	0.695
DOF5.6 M01063_2.00	Arabidopsis thaliana	NYDDWNNNN	NNNNWHHRN	PBM Sullivan et al.(2014) pTH7192	0.695	0.695
DOF5.6 M01950_2.00	Arabidopsis thaliana	NCKTTWNN	NNWAAMGN	PBM Weirauch et al.(2014) pTH7655	0.695	0.695
DOF3.2 M06847_2.00	Arabidopsis thaliana	NYHVCTTTTTNNHHTHHNN	NNDDADDNNAAAAAGBDRN	Dap-seq OMalley et al.(2016) At3g45610_col_a	0.695	0.695
DOF3.2 M06848_2.00	Arabidopsis thaliana	NNHDDYHVCTTTTTB	VAAAAAGBDRHHDNN	Dap-seq OMalley et al.(2016) At3g45610_colamp_a	0.695	0.695
DOF4.7 M06861_2.00	Arabidopsis thaliana	HHHHYHHHNHHHHHHHWWTWWCTTTTTN	NAAAAAGWWAWWDDDDDDDNDDDRDDDD	Dap-seq OMalley et al.(2016) At4g38000_col_a	0.695	0.695
DOF4.7 M06862_2.00	Arabidopsis thaliana	NYWACTTTWTB	VAWAAAGTWRN	Dap-seq OMalley et al.(2016) At4g38000_colamp_a	0.695	0.695
DOF5.6 M06867_2.00	Arabidopsis thaliana	HHTYHNCTTTTTNHHHHHHHH	DDDDDDDDNAAAAAGNDRADD	Dap-seq OMalley et al.(2016) At5g62940_col_a	0.695	0.695
Q6RK62_WHEAT M10441_2.00	Triticum aestivum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$PBF_Q2_01	0.695	0.695
PK16340.1 M01220_2.00	Cannabis sativa	CKTTWNN	NNWAAMG	PBM Lambert et al.(2019) pTH10129	0.678	0.678
DOF1.6 M06831_2.00	Arabidopsis thaliana	HYACTTTWNNN	NNNWAAAGTRD	Dap-seq OMalley et al.(2016) AT1G47655_col_a	0.678	0.678
DOF1.6 M06832_2.00	Arabidopsis thaliana	YYYTTDNCTTTWYBN	NVRWAAAGNHAARRR	Dap-seq OMalley et al.(2016) AT1G47655_colamp_a	0.678	0.678
DOF1.5 M01938_2.00	Arabidopsis thaliana	ACKTTWWH	DWWAAMGT	PBM Weirauch et al.(2014) pTH7676	0.661	0.661
CDF3 M01944_2.00	Arabidopsis thaliana	NHVCTTTWN	NWAAAGBDN	PBM Weirauch et al.(2014) pTH7659	0.661	0.661
gw1.385.26.1 M01956_2.00	Physcomitrella patens	NNNCKTTWNN	NNWAAMGNNN	PBM Weirauch et al.(2014) pTH8458	0.661	0.661
DOF5.8 M06868_2.00	Arabidopsis thaliana	HHNHHYHHHHYTTTHNCTTTTKNNHHNHW	WDNDDNNMAAAAGNDAAARDDDDRDDNDD	Dap-seq OMalley et al.(2016) AT5G66940_col_a	0.661	0.661
DOF5.8 M06869_2.00	Arabidopsis thaliana	NNHNDYWRCTTTTTNNHYHNH	DNDRDNNAAAAAGYWRHNDNN	Dap-seq OMalley et al.(2016) AT5G66940_colamp_a	0.661	0.661
CDF3 M06849_2.00	Arabidopsis thaliana	HWTDYMCTTTTTNNHHHHW	WDDDDNNAAAAAGKRHAWD	Dap-seq OMalley et al.(2016) CDF3_col_a	0.661	0.661
CDF3 M06850_2.00	Arabidopsis thaliana	DDYRCTTTTHNNHYTTTN	NAAARDNNDAAAAGYRHH	Dap-seq OMalley et al.(2016) CDF3_colamp_a	0.661	0.661
DOF1.5 M06829_2.00	Arabidopsis thaliana	HWTDYMCTTTTTNHHHBHHNN	NNDDVDDDNAAAAAGKRHAWD	Dap-seq OMalley et al.(2016) COG1_col_a	0.661	0.661
DOF1.5 M06830_2.00	Arabidopsis thaliana	NHWWTDYACTTTTTN	NAAAAAGTRHAWWDN	Dap-seq OMalley et al.(2016) COG1_colamp_a	0.661	0.661
CDF2 M01946_2.00	Arabidopsis thaliana	NHVCTTTWHN	NDWAAAGBDN	PBM Weirauch et al.(2014) pTH7574	0.644	0.644
e_gw1.149.93.1 M01951_2.00	Physcomitrella patens	NCDTTNNN	NNNAAHGN	PBM Weirauch et al.(2014) pTH8463	0.644	0.644
e_gw1.392.16.1 M01953_2.00	Physcomitrella patens	NNCTTTWNN	NNWAAAGNN	PBM Weirauch et al.(2014) pTH8686	0.644	0.644
estExt_fgenesh1_pg.C_370003 M01954_2.00	Physcomitrella patens	NNNNHDNNNN	NNNNHDNNNN	PBM Weirauch et al.(2014) pTH8469	0.644	0.644
MNB1A M02677_2.00	Zea mays	DCTTT	AAAGH	SELEX Mathelier et al.(2014) MA0053.1	0.644	0.644
MNB1A M10440_2.00	Zea mays	NNDCTTTWNNN	NNNWAAAGHNN	Transfac Matys et al.(2006) P$DOF1_01	0.644	0.644
PK23009.1 M01223_2.00	Cannabis sativa	NNHVCTTTWN	NWAAAGBDNN	PBM Lambert et al.(2019) pTH10279	0.627	0.627
Dof2 M02674_2.00	Zea mays	NGCTTT	AAAGCN	SELEX Mathelier et al.(2014) MA0020.1	0.627	0.627
Dof2 M10436_2.00	Zea mays	NNDCTTTWNND	HNNWAAAGHNN	Transfac Matys et al.(2006) P$DOF2_01	0.627	0.627
Dof2 M10437_2.00	Zea mays	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$DOF_Q2	0.627	0.627
CDF5 M06837_2.00	Arabidopsis thaliana	HHWKYDCTTTTHHYTTTHYHYYWHNHH	DDNDWRRDRDAAARDDAAAAGHRMWDD	Dap-seq OMalley et al.(2016) AT1G69570_col_a	0.610	0.610
CDF5 M06838_2.00	Arabidopsis thaliana	YVCTTTTNNYTTWHHHBHBNN	NNVDVDDDWAARNNAAAAGBR	Dap-seq OMalley et al.(2016) AT1G69570_colamp_a	0.610	0.610
DOF4.3 M06857_2.00	Arabidopsis thaliana	AAAGNYRCTTT	AAAGYRNCTTT	Dap-seq OMalley et al.(2016) dof43_col_a	0.610	0.610
DOF4.3 M06858_2.00	Arabidopsis thaliana	NWAAAGHRVCTTTW	WAAAGBYDCTTTWN	Dap-seq OMalley et al.(2016) dof43_colamp_a	0.610	0.610
DOF4.5 M06859_2.00	Arabidopsis thaliana	AAAKYHDCTTTWTN	NAWAAAGHDRMTTT	Dap-seq OMalley et al.(2016) dof45_col_a	0.593	0.593
DOF4.5 M06860_2.00	Arabidopsis thaliana	WAAAGYYDCTTTWDN	NHWAAAGHRRCTTTW	Dap-seq OMalley et al.(2016) dof45_colamp_a	0.593	0.593
For this family, TFs with SR scores > 0.508* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Bra028872.1-P	Dof	92	150	ETALKCPRCDSTNTKFCYFNNYNLTQPRHFCKACRRYWTRGGALRSVPVGGGCRRNKRT

Links
Other Dof family TFs
Other *Brassica rapa* TFs

1977 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
Afo_R005132	Aptenodytes forsteri	Afo_R005132	N	0.000
Alligator_sinensis_CCG012870.1	Alligator sinensis	Alligator_sinensis_CCG012870.1	N	0.000
ZBTB5	Anolis carolinensis	ENSACAG00000011965	N	0.000
ENSAMEG00000019436	Ailuropoda melanoleuca	ENSAMEG00000019436	N	0.000
ENSAMXG00000004140	Astyanax mexicanus	ENSAMXG00000004140	N	0.000
ENSAPLG00000001994	Anas platyrhynchos	ENSAPLG00000001994	N	0.000
ENSAPLG00000002091	Anas platyrhynchos	ENSAPLG00000002091	N	0.000
ZBTB5	Bos taurus	ENSBTAG00000007761	N	0.000
ZBTB5	Canis familiaris	ENSCAFG00000029817	N	0.000
ZBTB5	Choloepus hoffmanni	ENSCHOG00000007877	N	0.000
ZBTB5	Callithrix jacchus	ENSCJAG00000010502	N	0.000
ENSCSAG00000000456	Chlorocebus sabaeus	ENSCSAG00000000456	N	0.000
ZBTB5	Dasypus novemcinctus	ENSDNOG00000010253	N	0.000
Zbtb5	Dipodomys ordii	ENSDORG00000013170	N	0.000
ZBTB5	Equus caballus	ENSECAG00000004450	N	0.000
ZBTB5	Erinaceus europaeus	ENSEEUG00000011920	N	0.000
ZBTB5	Echinops telfairi	ENSETEG00000002372	N	0.000
ENSFALG00000012967	Ficedula albicollis	ENSFALG00000012967	N	0.000
ZBTB5	Felis catus	ENSFCAG00000013080	N	0.000
ZBTB5	Homo sapiens	ENSG00000168795	N	0.000
ZBTB5	Gallus gallus	ENSGALG00000005354	N	0.000
ZBTB5	Gorilla gorilla	ENSGGOG00000003712	N	0.000
ENSGMOG00000003377	Gadus morhua	ENSGMOG00000003377	N	0.000
ENSLACG00000004172	Latimeria chalumnae	ENSLACG00000004172	N	0.000
ZBTB5	Loxodonta africana	ENSLAFG00000014479	N	0.000
ENSLOCG00000012855	Lepisosteus oculatus	ENSLOCG00000012855	N	0.000
ENSMEUG00000011041	Macropus eugenii	ENSMEUG00000011041	N	0.000
ZBTB5	Meleagris gallopavo	ENSMGAG00000016120	N	0.000
ENSMICG00000003671	Microcebus murinus	ENSMICG00000003671	N	0.000
ZBTB5	Myotis lucifugus	ENSMLUG00000012686	N	0.000
ZBTB5	Macaca mulatta	ENSMMUG00000017894	N	0.000
ZBTB5	Monodelphis domestica	ENSMODG00000025213	N	0.000
ENSMPUG00000018533	Mustela putorius furo	ENSMPUG00000018533	N	0.000
Zbtb5	Mus musculus	ENSMUSG00000049657	N	0.000
ENSNLEG00000003629	Nomascus leucogenys	ENSNLEG00000003629	N	0.000
ZBTB5	Oryctolagus cuniculus	ENSOCUG00000007041	N	0.000
ZBTB5	Otolemur garnettii	ENSOGAG00000012980	N	0.000
ENSONIG00000008925	Oreochromis niloticus	ENSONIG00000008925	N	0.000
ZBTB5	Ochotona princeps	ENSOPRG00000014200	N	0.000
ZBTB5	Oryzias latipes	ENSORLG00000005151	N	0.000
ENSP00000307604	Macaca fascicularis	ENSP00000307604	N	0.000
ENSP00000307604-D1	Bos grunniens	ENSP00000307604-D1	N	0.000
ENSPFOG00000019621	Poecilia formosa	ENSPFOG00000019621	N	0.000
ENSPPYG00000019062	Pongo abelii	ENSPPYG00000019062	N	0.000
ENSPSIG00000003260	Pelodiscus sinensis	ENSPSIG00000003260	N	0.000
ZBTB5	Pan troglodytes	ENSPTRG00000020941	N	0.000
ZBTB5	Pteropus vampyrus	ENSPVAG00000007939	N	0.000
Zbtb5	Rattus norvegicus	ENSRNOG00000012726	N	0.000
ZBTB5	Sorex araneus	ENSSARG00000012933	N	0.000
ENSSHAG00000015981	Sarcophilus harrisii	ENSSHAG00000015981	N	0.000
ENSSTOG00000027806	Ictidomys tridecemlineatus	ENSSTOG00000027806	N	0.000
ZBTB5	Taeniopygia guttata	ENSTGUG00000007188	N	0.000
ZBTB5	Tetraodon nigroviridis	ENSTNIG00000017813	N	0.000
ZBTB5	Takifugu rubripes	ENSTRUG00000006314	N	0.000
ENSTSYG00000014359	Tarsius syrichta	ENSTSYG00000014359	N	0.000
ZBTB5	Tursiops truncatus	ENSTTRG00000008293	N	0.000
Myotis_brandtii_ZBTB5_10017822	Myotis brandtii	Myotis_brandtii_ZBTB5_10017822	N	0.000
Pvit_15550	Pogona vitticeps	Pvit_15550	N	0.000
Tal_R000100	Tyto alba	Tal_R000100	N	0.000
zbtb5	Xenopus tropicalis	XB-GENE-1015618	N	0.000
zbtb5.L	Xenopus laevis	XB-GENE-1015624	N	0.000

Bra028872 (Brassica rapa) Dof

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

1977 Related TFs

Bra028872 **(Brassica rapa)
Dof**