Bostr.18473s0137 (Boechera stricta)
E2F

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02319 (E2F_TDP) IPR003316 Bostr.18473s0137 T173891_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
E2FE
M01958_2.00 		Arabidopsis thaliana
HDSGCGCSHD
HDSGCGCSHD		 PBM
Weirauch et al.(2014)
pTH8176 		0.956 0.956
E2FE
M06873_2.00 		Arabidopsis thaliana
TTTTGGCGGGAAAWWNWNDDN
NHHNWNWWTTTCCCGCCAAAA		 Dap-seq
OMalley et al.(2016)
DEL1_col_a 		0.956 0.956
E2FE
M06874_2.00 		Arabidopsis thaliana
DTTTTGGCGGGAAAA
TTTTCCCGCCAAAAH		 Dap-seq
OMalley et al.(2016)
DEL1_colamp_a 		0.947 0.947
E2FD
M06875_2.00 		Arabidopsis thaliana
DWWHDDTTTTGGCGGGAAAW
WTTTCCCGCCAAAAHHDWWH		 Dap-seq
OMalley et al.(2016)
DEL2_col_a 		0.667 0.667
E2FD
M06876_2.00 		Arabidopsis thaliana
DTTTTGGCGGGAAAA
TTTTCCCGCCAAAAH		 Dap-seq
OMalley et al.(2016)
DEL2_colamp_a 		0.654 0.654
E2FD
M10442_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$E2L1_Q2 		0.654 0.654
E2FD
M10443_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$E2L_Q2 		0.654 0.654
E2F7
M02960_2.00 		Homo sapiens
WTTTGGCGGGAAAH
DTTTCCCGCCAAAW		 SELEX
Jolma et al.(2013)
E2F7_1 		0.610 0.610
E2F7
M04705_2.00 		Homo sapiens
WTTTGGCGGGAAAN
NTTTCCCGCCAAAW		 SELEX
Yin et al.(2017)
E2F7_eDBD_HT-SELEX 		0.610 0.610
E2F7
M09033_2.00 		Homo sapiens
NDGGCGGGRRNDV
BHNYYCCCGCCHN		 Misc
Kulakovskiy et al.(2013)
E2F7_HUMAN.H11MO.0.B 		0.610 0.610
E2f7
M09040_2.00 		Mus musculus
NDGGCGGGRRNDV
BHNYYCCCGCCHN		 Misc
Kulakovskiy et al.(2013)
E2F7_MOUSE.H11MO.0.C 		0.610 0.610
E2F7
M09522_2.00 		Homo sapiens
NSGCGSGAAMNN
NNKTTCSCGCSN		 Misc
Heinz et al.(2010)
Hela-E2F7_GSE32673 		0.610 0.610
E2F7
M04706_2.00 		Homo sapiens
WTTTGGCGGGAAAH
DTTTCCCGCCAAAW		 SELEX
Yin et al.(2017)
E2F7_eDBD_Methyl-HT-SELEX 		0.610 0.610
E2F8
M02959_2.00 		Homo sapiens
TTTGGCGGGAAA
TTTCCCGCCAAA		 SELEX
Jolma et al.(2013)
E2F8_1 		0.596 0.596
E2F8
M04703_2.00 		Homo sapiens
WDKTGGCGGGARNN
NNYTCCCGCCAMHW		 SELEX
Yin et al.(2017)
E2F8_eDBD_HT-SELEX 		0.596 0.596
E2F8
M04704_2.00 		Homo sapiens
WTTTGGCGGGAAWN
NWTTCCCGCCAAAW		 SELEX
Yin et al.(2017)
E2F8_eDBD_Methyl-HT-SELEX 		0.596 0.596
For this family, TFs with SR scores > 0.429 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bostr.18473s0137.1.p E2F 89 153
Bostr.18473s0137.1.p E2F 224 303
Bostr.18473s0137.2.p E2F 1 43
Bostr.18473s0137.2.p E2F 114 193

Links

Other E2F family TFs
Other Boechera stricta TFs

349 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R015370 Calypte anna Aan_R015370 I
Afo_R015728 Aptenodytes forsteri Afo_R015728 I
Alligator_sinensis_CCG003524.1 Alligator sinensis Alligator_sinensis_CCG003524.1 I
Brh_R011889 Buceros rhinoceros Brh_R011889 I
Cmyd_10010643 Chelonia mydas Cmyd_10010643 I
ENSAMEG00000001062 Ailuropoda melanoleuca ENSAMEG00000001062 I
ENSAPLG00000009825 Anas platyrhynchos ENSAPLG00000009825 I
ENSBTAG00000023372 Bos taurus ENSBTAG00000023372 I
ENSCAFG00000003715 Canis familiaris ENSCAFG00000003715 I
MYCN Cavia porcellus ENSCPOG00000020263 I
ENSCSAG00000007889 Chlorocebus sabaeus ENSCSAG00000007889 I
MYCN Dasypus novemcinctus ENSDNOG00000047342 I
Mycn Dipodomys ordii ENSDORG00000009906 I
ENSECAG00000002896 Equus caballus ENSECAG00000002896 I
ENSETEG00000007657 Echinops telfairi ENSETEG00000007657 I
ENSFALG00000008694 Ficedula albicollis ENSFALG00000008694 I
ENSFCAG00000022893 Felis catus ENSFCAG00000022893 I
MYCN Homo sapiens ENSG00000134323 D
MYCN Gallus gallus ENSGALG00000016462 I
MYCN Gorilla gorilla ENSGGOG00000005130 I
ENSLACG00000008338 Latimeria chalumnae ENSLACG00000008338 I
MYCN Loxodonta africana ENSLAFG00000015181 I
ENSMEUG00000006154 Macropus eugenii ENSMEUG00000006154 I
ENSMGAG00000015965 Meleagris gallopavo ENSMGAG00000015965 I
MYCN Microcebus murinus ENSMICG00000013903 I
ENSMLUG00000026821 Myotis lucifugus ENSMLUG00000026821 I
ENSMMUG00000018805 Macaca mulatta ENSMMUG00000018805 I
ENSMMUP00000024750 Macaca fascicularis ENSMMUP00000024750 I
ENSMPUG00000013620 Mustela putorius furo ENSMPUG00000013620 I
Mycn Mus musculus ENSMUSG00000037169 D
ENSNLEG00000014496 Nomascus leucogenys ENSNLEG00000014496 I
MYCN Ornithorhynchus anatinus ENSOANG00000012832 I
ENSOARG00000016462 Ovis aries ENSOARG00000016462 I
ENSOCUG00000026053 Oryctolagus cuniculus ENSOCUG00000026053 I
MYCN Otolemur garnettii ENSOGAG00000010927 I
MYCN Ochotona princeps ENSOPRG00000004369 I
ENSP00000281043-D1 Bos grunniens ENSP00000281043-D1 I
ENSPANG00000019058 Papio anubis ENSPANG00000019058 I
ENSPPYG00000012635 Pongo abelii ENSPPYG00000012635 I
ENSPSIG00000012289 Pelodiscus sinensis ENSPSIG00000012289 I
MYCN Pan troglodytes ENSPTRG00000011672 I
MYCN Pteropus vampyrus ENSPVAG00000010355 I
Mycn Rattus norvegicus ENSRNOG00000051372 I
MYCN Sus scrofa ENSSSCG00000008618 I
ENSSTOG00000012252 Ictidomys tridecemlineatus ENSSTOG00000012252 I
ENSSTOG00000021587 Ictidomys tridecemlineatus ENSSTOG00000021587 I
MYCN Taeniopygia guttata ENSTGUG00000013104 I
MYCN Tursiops truncatus ENSTTRG00000005135 I
ENSVPAG00000007723 Vicugna pacos ENSVPAG00000007723 I
Gfo_R015246 Geospiza fortis Gfo_R015246 I
Myotis_brandtii_MYCN_10020172 Myotis brandtii Myotis_brandtii_MYCN_10020172 I
Ogr12112 Ophisaurus gracilis Ogr12112 I
Pvit_07093 Pogona vitticeps Pvit_07093 I
Tal_R000146 Tyto alba Tal_R000146 I