CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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SPI1
(
Homo sapiens
)
Ets
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00178 (Ets)
IPR000418
ENSG00000066336
T176113_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
This gene encodes an ETS-domain transcription factor that activates gene expression during myeloid and B-lymphoid cell development. The nuclear protein binds to a purine-rich sequence known as the PU-box found near the promoters of target genes, and regulates their expression in coordination with other transcription factors and cofactors. The protein can also regulate alternative splicing of target genes. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2008]
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
SPI1
M02965_2.00
Homo sapiens
RAAAAGMGGAAGTW
WACTTCCKCTTTTY
SELEX
Jolma et al.(2013)
SPI1_1
(Direct)
(Direct)
SPI1
M07944_2.00
Homo sapiens
NRAAWGRGGAASTGRRANN
NNTYYCASTTCCYCWTTYN
ChIP-seq
Gerstein et al.(2012)
GM12878_PU1_HudsonAlpha
(Direct)
(Direct)
SPI1
M07945_2.00
Homo sapiens
AAWGRGGAASTGARAVHNN
NNDBTYTCASTTCCYCWTT
ChIP-seq
Gerstein et al.(2012)
GM12891_PU1_HudsonAlpha
(Direct)
(Direct)
SPI1
M07946_2.00
Homo sapiens
RRAAAGAGGAAGTGV
BCACTTCCTCTTTYY
ChIP-seq
Gerstein et al.(2012)
K562_PU1_HudsonAlpha
(Direct)
(Direct)
SPI1
M08026_2.00
Homo sapiens
VRAAWGRGGAAGTGV
BCACTTCCYCWTTYB
ChIP-seq
Chen et al.(2011)
SRP005406_SPI1
(Direct)
(Direct)
SPI1
M09047_2.00
Homo sapiens
VRAAWGRGGAAGTGRNN
NNYCACTTCCYCWTTYB
Misc
Kulakovskiy et al.(2013)
SPI1_HUMAN.H11MO.0.A
(Direct)
(Direct)
SPI1
M10472_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PU1_Q4
(Direct)
(Direct)
SPI1
M10473_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PU1_Q6
(Direct)
(Direct)
SPI1
M10474_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SPI1_01
(Direct)
(Direct)
SPI1
M10475_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SPI1_07
(Direct)
(Direct)
SPI1
M10476_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SPI1_08
(Direct)
(Direct)
SPI1
M10477_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SPI1_Q5
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Spi1
M00155_2.00
Mus musculus
NNNVGGAAVH
DBTTCCBNNN
PBM
Badis et al.(2009)
Sfpi1_1034
0.997
1.000
Spi1
M01475_2.00
Mus musculus
DDNVGGAASY
RSTTCCBNHH
PBM
Wei et al.(2010)
Sfpi1
0.997
1.000
Spi1
M08027_2.00
Mus musculus
VRRAWRRGGAAGWVD
HBWCTTCCYYWTYYB
ChIP-seq
Chen et al.(2011)
GSE11329_Sfpi1
0.997
1.000
Spi1
M09065_2.00
Mus musculus
VRARWGRGGAAGTGV
BCACTTCCYCWYTYB
Misc
Kulakovskiy et al.(2013)
SPI1_MOUSE.H11MO.0.A
0.997
1.000
Spi1
M09538_2.00
Mus musculus
WGAGGAAGTG
CACTTCCTCW
Misc
Heinz et al.(2010)
ThioMac-PU.1_GSE21512
0.997
1.000
SPIC
M03005_2.00
Homo sapiens
NRAAWSVGGAAGTM
KACTTCCBSWTTYN
SELEX
Jolma et al.(2013)
SPIC_1
0.975
0.625
Spic
M01480_2.00
Mus musculus
NNNNRGAAV
BTTCYNNNN
PBM
Wei et al.(2010)
Spic
0.966
0.613
Spic
M03009_2.00
Mus musculus
RAAAAGMGGAAGTW
WACTTCCKCTTTTY
SELEX
Jolma et al.(2013)
Spic_1
0.966
0.613
SPIB
M03008_2.00
Homo sapiens
NAAAAGMGGAAGTD
HACTTCCKCTTTTN
SELEX
Jolma et al.(2013)
SPIB_1
0.960
0.738
SPIB
M04803_2.00
Homo sapiens
DWDGVGGAAGTD
HACTTCCBCHWH
SELEX
Yin et al.(2017)
SPIB_eDBD_HT-SELEX
0.960
0.738
SPIB
M04805_2.00
Homo sapiens
NWWWRVGGAASTN
NASTTCCBYWWWN
SELEX
Yin et al.(2017)
SPIB_FL_HT-SELEX
0.960
0.738
SPIB
M02678_2.00
Homo sapiens
WSMGGAA
TTCCKSW
SELEX
Mathelier et al.(2014)
MA0081.1
0.960
0.738
SPIB
M09064_2.00
Homo sapiens
NRAAWGRGGAAGTGRRD
HYYCACTTCCYCWTTYN
Misc
Kulakovskiy et al.(2013)
SPIB_HUMAN.H11MO.0.A
0.960
0.738
Spib
M09068_2.00
Mus musculus
RAAAGRGGAAGTGRVWN
NWBYCACTTCCYCTTTY
Misc
Kulakovskiy et al.(2013)
SPIB_MOUSE.H11MO.0.A
0.960
0.738
SPIB
M09537_2.00
Homo sapiens
AAARVGGAASTG
CASTTCCBYTTT
Misc
Heinz et al.(2010)
OCILY3-SPIB_GSE56857
0.960
0.738
SPIB
M10519_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SPIB_01
0.960
0.738
SPIB
M04804_2.00
Homo sapiens
DAWGRGGAAGTD
HACTTCCYCWTH
SELEX
Yin et al.(2017)
SPIB_eDBD_Methyl-HT-SELEX
0.960
0.738
SPIB
M04806_2.00
Homo sapiens
RWWWGRGGAAGTD
HACTTCCYCWWWY
SELEX
Yin et al.(2017)
SPIB_FL_Methyl-HT-SELEX
0.960
0.738
Elf5
M01490_2.00
Mus musculus
DNVVGGAARH
DYTTCCBBNH
PBM
Wei et al.(2010)
Elf5
0.730
0.425
ELF5
M02988_2.00
Homo sapiens
WNVMGGAAGTN
NACTTCCKBNW
SELEX
Jolma et al.(2013)
ELF5_1
0.730
0.425
ELF5
M02989_2.00
Homo sapiens
WNVMGGAARYN
NRYTTCCKBNW
SELEX
Jolma et al.(2013)
ELF5_2
0.730
0.425
Elf5
M03011_2.00
Mus musculus
WNVMGGAARYN
NRYTTCCKBNW
SELEX
Jolma et al.(2013)
Elf5_1
0.730
0.425
ELF5
M04756_2.00
Homo sapiens
NDNVMGGAAGBD
HVCTTCCKBNHN
SELEX
Yin et al.(2017)
ELF5_eDBD_HT-SELEX
0.730
0.425
ELF5
M04758_2.00
Homo sapiens
NAMCCGGAAGYN
NRCTTCCGGKTN
SELEX
Yin et al.(2017)
ELF5_FL_HT-SELEX
0.730
0.425
ELF5
M09054_2.00
Homo sapiens
VVVANVMGGAAGHDV
BHDCTTCCKBNTBBB
Misc
Kulakovskiy et al.(2013)
ELF5_HUMAN.H11MO.0.A
0.730
0.425
Elf5
M09076_2.00
Mus musculus
RGRAVRAGGAAGDRRNN
NNYYHCTTCCTYBTYCY
Misc
Kulakovskiy et al.(2013)
ELF5_MOUSE.H11MO.0.A
0.730
0.425
ELF5
M09534_2.00
Homo sapiens
ABVMGGAAGT
ACTTCCKBVT
Misc
Heinz et al.(2010)
T47D-ELF5_GSE30407
0.730
0.425
ELF5
M10501_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$ELF5_01
0.730
0.425
ELF5
M04757_2.00
Homo sapiens
NABVAGGAAGTD
HACTTCCTBVTN
SELEX
Yin et al.(2017)
ELF5_eDBD_Methyl-HT-SELEX
0.730
0.425
ELF5
M04759_2.00
Homo sapiens
DABVAGGAAGTD
HACTTCCTBVTH
SELEX
Yin et al.(2017)
ELF5_FL_Methyl-HT-SELEX
0.730
0.425
For this family, TFs with SR scores >
0.717
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSP00000227163
Ets
172
254
RLYQFLLDLLRSGDMKDSIWWVDKDKGTFQFSSKHKEALAHRWGIQKGNRKKMTYQKMARALRNYGKTGEVKKVKKKLTYQFS
ENSP00000367799
Ets
171
253
RLYQFLLDLLRSGDMKDSIWWVDKDKGTFQFSSKHKEALAHRWGIQKGNRKKMTYQKMARALRNYGKTGEVKKVKKKLTYQFS
Links
Other
Ets
family TFs
Other
Homo sapiens
TFs
262 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy