CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Gorai.005G226900
(
Gossypium raimondii
)
FAR1
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03101 (FAR1)
IPR004330
Gorai.005G226900
T181496_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Gorai.005G226900.1
FAR1
34
121
VGEFAVSQGYVVTIKQSKRDKVVVLGCDRGGVYRNRRKPIDESAAECIRRRRTGSRLTNCPFEVVGKKDDGLWVLTVKNGTHNHEPLK
Gorai.005G226900.2
FAR1
34
121
VGEFAVSQGYVVTIKQSKRDKVVVLGCDRGGVYRNRRKPIDESAAECIRRRRTGSRLTNCPFEVVGKKDDGLWVLTVKNGTHNHEPLK
Gorai.005G226900.3
FAR1
34
121
VGEFAVSQGYVVTIKQSKRDKVVVLGCDRGGVYRNRRKPIDESAAECIRRRRTGSRLTNCPFEVVGKKDDGLWVLTVKNGTHNHEPLK
Links
Other
FAR1
family TFs
Other
Gossypium raimondii
TFs
10 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
29804.m001547
Ricinus communis
29804.m001547
N
0.866
cassava12560.valid.m1
Manihot esculenta
cassava12560.valid.m1
N
0.720
Eucgr.I02605
Eucalyptus grandis
Eucgr.I02605
N
0.805
evm.TU.supercontig_20.29
Carica papaya
evm.TU.supercontig_20.29
N
0.778
gene27124-v1.0-hybrid
Fragaria vesca
gene27124-v1.0-hybrid
N
0.841
MDP0000168881
Malus domestica
MDP0000168881
N
0.707
PRUPE_ppa002231mg
Prunus persica
PRUPE_ppa002231mg
N
0.866
TCM_046720
Theobroma cacao
TCM_046720
N
0.720
VIT_03s0132g00230
Vitis vinifera
VIT_03s0132g00230
N
0.827