CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

DAPPUDRAFT_335438 *(Daphnia pulex)* Forkhead
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00250 (Forkhead)	IPR001766	DAPPUDRAFT_335438	T185001_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
FOXP1 M00836_2.00	Homo sapiens	NRTMAACANN	NNTGTTKAYN	PBM Gabut et al.(2011) pEX0123	0.824	0.877
FOXP1 M00837_2.00	Homo sapiens	DGTAAACAA	TTGTTTACH	PBM Gabut et al.(2011) pEX0124	0.824	0.877
FOXP1 M01976_2.00	Homo sapiens	RTAAACAA	TTGTTTAY	PBM Weirauch et al.(2014) pTH5656	0.824	0.877
Foxp1 M00793_2.00	Mus musculus	NRTMAAYAN	NTRTTKAYN	PBM Weirauch et al.(2013) pTH3855	0.824	0.877
FOXP1 M04811_2.00	Homo sapiens	NTGTTTRYNRTNNNNNNBNAYRVWMAACAN	NTGTTKWBYRTNVNNNNNNAYNRYAAACAN	SELEX Yin et al.(2017) FOXP1_eDBD_HT-SELEX	0.824	0.877
FOXP1 M08115_2.00	Homo sapiens	NDGTAAACAVNN	NNBTGTTTACHN	ChIP-seq Mathelier et al.(2014) MA0481.2	0.824	0.877
FOXP1 M09086_2.00	Homo sapiens	RKAAACAVM	KBTGTTTMY	Misc Kulakovskiy et al.(2013) FOXP1_HUMAN.H11MO.0.A	0.824	0.877
FOXP1 M09541_2.00	Homo sapiens	NDGTAAACAVNN	NNBTGTTTACHN	Misc Heinz et al.(2010) H9-FOXP1_GSE31006	0.824	0.877
FOXP1 M10536_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$FOXP1_01	0.824	0.877
FOXP1 M04812_2.00	Homo sapiens	NTGTTTRYBRTNNNNNNBNAYRVWMAACAH	DTGTTKWBYRTNVNNNNNNAYVRYAAACAN	SELEX Yin et al.(2017) FOXP1_eDBD_Methyl-HT-SELEX	0.824	0.877
Foxp2 M00792_2.00	Mus musculus	RTAAACAD	HTGTTTAY	PBM Weirauch et al.(2013) pTH1288	0.748	0.852
FOXP2 M05866_2.00	Homo sapiens	RTAAAYAWNN	NNWTRTTTAY	SMiLE-seq Isakova et al.(2017) FOXP2	0.748	0.852
FOXP2 M08116_2.00	Homo sapiens	NDGTAAACAVN	NBTGTTTACHN	ChIP-seq Mathelier et al.(2014) MA0593.1	0.748	0.852
FOXP2 M09089_2.00	Homo sapiens	DGTAAACAV	BTGTTTACH	Misc Kulakovskiy et al.(2013) FOXP2_HUMAN.H11MO.0.C	0.748	0.852
Foxp2 M09101_2.00	Mus musculus	NGTAAACAN	NTGTTTACN	Misc Kulakovskiy et al.(2013) FOXP2_MOUSE.H11MO.0.A	0.748	0.852
FoxP M03753_2.00	Drosophila melanogaster	AAACAACAACAA	TTGTTGTTGTTT	SELEX Nitta et al.(2015) CG16899_1	0.741	0.778
FoxP M06201_2.00	Drosophila melanogaster	VRTAAACAA	TTGTTTAYB	B1H Zhu et al.(2011) CG16899_SANGER_5_FBgn0037735	0.741	0.778
FoxP M06202_2.00	Drosophila melanogaster	VNNVBBAAAAAAAD	HTTTTTTTVVBNNB	B1H Zhu et al.(2011) CG2052_SANGER_2.5_FBgn0039905	0.741	0.778
FoxP M06203_2.00	Drosophila melanogaster	NNNNNRAAAAAAWNN	NNWTTTTTTYNNNNN	B1H Zhu et al.(2011) CG2052_SOLEXA_2.5_FBgn0039905	0.741	0.778
Foxj3 M00160_2.00	Mus musculus	NRTAAACAHN	NDTGTTTAYN	PBM Badis et al.(2009) Foxj3_0982	0.680	0.457
Foxj3 M01981_2.00	Mus musculus	VNHHAYANN	NNTRTDDNB	PBM Weirauch et al.(2014) pTH6591	0.680	0.457
Foxj3 M03055_2.00	Mus musculus	ACGGACACAAT	ATTGTGTCCGT	SELEX Jolma et al.(2013) Foxj3_1	0.680	0.457
Foxj3 M03056_2.00	Mus musculus	GTAAACARTMAACA	TGTTKAYTGTTTAC	SELEX Jolma et al.(2013) Foxj3_2	0.680	0.457
Foxj3 M03057_2.00	Mus musculus	RTAAACAW	WTGTTTAY	SELEX Jolma et al.(2013) Foxj3_3	0.680	0.457
Foxj3 M03058_2.00	Mus musculus	RTAAACAWAAACA	TGTTTWTGTTTAY	SELEX Jolma et al.(2013) Foxj3_4	0.680	0.457
Foxj3 M09102_2.00	Mus musculus	WAAMMATAAACAN	NTGTTTATKKTTW	Misc Kulakovskiy et al.(2013) FOXJ3_MOUSE.H11MO.0.A	0.680	0.457
FOXJ3 M03046_2.00	Homo sapiens	RTAAAVAA	TTBTTTAY	SELEX Jolma et al.(2013) FOXJ3_1	0.679	0.457
FOXJ3 M03047_2.00	Homo sapiens	GTAAACARTMAACA	TGTTKAYTGTTTAC	SELEX Jolma et al.(2013) FOXJ3_2	0.679	0.457
FOXJ3 M03048_2.00	Homo sapiens	GTAAACATAAACA	TGTTTATGTTTAC	SELEX Jolma et al.(2013) FOXJ3_3	0.679	0.457
FOXJ3 M02736_2.00	Homo sapiens	AAACAATAAACA	TGTTTATTGTTT	SELEX Jolma et al.(2010) FOXJ3_dimer	0.679	0.457
FOXJ3 M02737_2.00	Homo sapiens	RTAAACAW	WTGTTTAY	SELEX Jolma et al.(2010) FOXJ3_monomer	0.679	0.457
FOXJ3 M04859_2.00	Homo sapiens	DYGTMAACAH	DTGTTKACRH	SELEX Yin et al.(2017) FOXJ3_eDBD_HT-SELEX	0.679	0.457
FOXJ3 M09098_2.00	Homo sapiens	WAAMMATAAACAN	NTGTTTATKKTTW	Misc Kulakovskiy et al.(2013) FOXJ3_HUMAN.H11MO.0.A	0.679	0.457
FOXJ3 M04860_2.00	Homo sapiens	RYGTMAACAH	DTGTTKACRY	SELEX Yin et al.(2017) FOXJ3_eDBD_Methyl-HT-SELEX	0.679	0.457
SPU_007644 M01987_2.00	Strongylocentrotus purpuratus	NNHHAYDNN	NNHRTDDNN	PBM Weirauch et al.(2014) pTH6497	0.668	0.457
FOXK2 M08118_2.00	Homo sapiens	NNRTAAACANN	NNTGTTTAYNN	ChIP-seq Mathelier et al.(2014) MA1103.1	0.664	0.432
daf-16 M01989_2.00	Caenorhabditis elegans	NNRWMAAYAN	NTRTTKWYNN	PBM Weirauch et al.(2014) pTH8995	0.664	0.432
For this family, TFs with SR scores > 0.664* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
EFX63453	Forkhead	474	557	RPPFTYASLIRQAIIESPERQLTLNEIYTWFQNTFCYFRHNAATWKNAVRHNLSLHKCFMRVENVKGAVWTVDEVEFHKRRPQS

Links
Other Forkhead family TFs
Other *Daphnia pulex* TFs

575 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
Bm3152	Brugia malayi	Bm3152	N
BTMF_0001331501	Brugia timori	BTMF_0001331501	N
EEL_0000182501	Elaeophora elaphi	EEL_0000182501	N
LOAG_06033	Loa loa	LOAG_06033	N
nAv.1.0.1.g05997	Acanthocheilonema viteae	nAv.1.0.1.g05997	N
nLs.2.1.2.g04935	Litomosoides sigmodontis	nLs.2.1.2.g04935	N
nOo.2.0.1.g09131	Onchocerca ochengi	nOo.2.0.1.g09131	N
OFLC_0000636001	Onchocerca flexuosa	OFLC_0000636001	N
TCLT_0000241801	Thelazia callipaeda	TCLT_0000241801	N
WBGene00237031	Onchocerca volvulus	WBGene00237031	N
WUBG_05017	Wuchereria bancrofti	WUBG_05017	N

DAPPUDRAFT_335438 (Daphnia pulex) Forkhead

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

575 Related TFs

DAPPUDRAFT_335438 **(Daphnia pulex)
Forkhead**