CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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FOXA1
(
Homo sapiens
)
Forkhead
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00250 (Forkhead)
IPR001766
ENSG00000129514
T185770_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
This gene encodes a member of the forkhead class of DNA-binding proteins. These hepatocyte nuclear factors are transcriptional activators for liver-specific transcripts such as albumin and transthyretin, and they also interact with chromatin. Similar family members in mice have roles in the regulation of metabolism and in the differentiation of the pancreas and liver. [provided by RefSeq, Jul 2008]
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
FOXA1
M04817_2.00
Homo sapiens
NTRTKTACMYWN
NWRKGTAMAYAN
SELEX
Yin et al.(2017)
FOXA1_eDBD_HT-SELEX
(Direct)
(Direct)
FOXA1
M04818_2.00
Homo sapiens
NWRDGYMAAYAW
WTRTTKRCHYWN
SELEX
Yin et al.(2017)
FOXA1_eDBD_Methyl-HT-SELEX
(Direct)
(Direct)
FOXA1
M04819_2.00
Homo sapiens
BVYTAWGTAAACAAWN
NWTTGTTTACWTARBV
SELEX
Yin et al.(2017)
FOXA1_FL_HT-SELEX_1
(Direct)
(Direct)
FOXA1
M04820_2.00
Homo sapiens
HWRWRYAAATATTKACWYWR
YWRWGTMAATATTTRYWYWD
SELEX
Yin et al.(2017)
FOXA1_FL_HT-SELEX_2
(Direct)
(Direct)
FOXA1
M04821_2.00
Homo sapiens
BVYTAWGTAAACAAWV
BWTTGTTTACWTARBV
SELEX
Yin et al.(2017)
FOXA1_FL_Methyl-HT-SELEX_1
(Direct)
(Direct)
FOXA1
M04822_2.00
Homo sapiens
YTRWRYAAATATTTACWYAR
YTRWGTAAATATTTRYWYAR
SELEX
Yin et al.(2017)
FOXA1_FL_Methyl-HT-SELEX_2
(Direct)
(Direct)
FOXA1
M07960_2.00
Homo sapiens
NNYWRWGYAAACANN
NNTGTTTRCWYWRNN
ChIP-seq
Gerstein et al.(2012)
ECC-1_FOXA1_HudsonAlpha
(Direct)
(Direct)
FOXA1
M07961_2.00
Homo sapiens
HWRWGTAAAYA
TRTTTACWYWD
ChIP-seq
Gerstein et al.(2012)
HepG2_FOXA1_HudsonAlpha
(Direct)
(Direct)
FOXA1
M07962_2.00
Homo sapiens
NWVWGTAAACA
TGTTTACWBWN
ChIP-seq
Gerstein et al.(2012)
T-47D_FOXA1_HudsonAlpha
(Direct)
(Direct)
FOXA1
M08028_2.00
Homo sapiens
WRWRYAAAYA
TRTTTRYWYW
ChIP-seq
Chen et al.(2011)
GSE15244_FoxA1
(Direct)
(Direct)
FOXA1
M08117_2.00
Homo sapiens
NNNNTRTTTACWYWD
HWRWGTAAAYANNNN
ChIP-seq
Mathelier et al.(2014)
MA0148.3
(Direct)
(Direct)
FOXA1
M08199_2.00
Homo sapiens
BWRDGTAAACANN
NNTGTTTACHYWV
ChIP-seq
Contrino et al.(2012)
Mv69
(Direct)
(Direct)
FOXA1
M09090_2.00
Homo sapiens
VHWRWGTAAACA
TGTTTACWYWDB
Misc
Kulakovskiy et al.(2013)
FOXA1_HUMAN.H11MO.0.A
(Direct)
(Direct)
FOXA1
M09543_2.00
Homo sapiens
WRWGTAAACA
TGTTTACWYW
Misc
Heinz et al.(2010)
LNCAP-FOXA1_GSE27824_1
(Direct)
(Direct)
FOXA1
M09544_2.00
Homo sapiens
WGCCAARRYAAAYANN
NNTRTTTRYYTTGGCW
Misc
Heinz et al.(2010)
LNCAP-FOXA1_GSE27824_2
(Direct)
(Direct)
FOXA1
M09545_2.00
Homo sapiens
WRWGTAAAYA
TRTTTACWYW
Misc
Heinz et al.(2010)
MCF7-FOXA1_GSE26831
(Direct)
(Direct)
FOXA1
M10542_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$FOXA1_02
(Direct)
(Direct)
FOXA1
M10543_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$FOXA1_03
(Direct)
(Direct)
FOXA1
M10544_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF3A_01
(Direct)
(Direct)
FOXA1
M10545_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF3ALPHA_Q6
(Direct)
(Direct)
FOXA1
M10546_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF3A_Q6
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Foxa1
M09103_2.00
Mus musculus
TRTTKACWYW
WRWGTMAAYA
Misc
Kulakovskiy et al.(2013)
FOXA1_MOUSE.H11MO.0.A
0.886
1.000
Q2L6N7_PELSI
M01990_2.00
Trionyx sinensis
KTRTTTACA
TGTAAAYAM
PBM
Weirauch et al.(2014)
pTH5334
0.874
0.942
FOXA3
M04831_2.00
Homo sapiens
BVYTAWGTAAACAAAN
NTTTGTTTACWTARBV
SELEX
Yin et al.(2017)
FOXA3_FL_HT-SELEX_1
0.854
0.953
FOXA3
M04832_2.00
Homo sapiens
HWRWGYAAATATTKACWYWD
HWRWGTMAATATTTRCWYWD
SELEX
Yin et al.(2017)
FOXA3_FL_HT-SELEX_2
0.854
0.953
FOXA3
M09096_2.00
Homo sapiens
HWRWGTMAAYADN
NHTRTTKACWYWD
Misc
Kulakovskiy et al.(2013)
FOXA3_HUMAN.H11MO.0.B
0.854
0.953
Foxa3
M09106_2.00
Mus musculus
HWRWGTMAAYADN
NHTRTTKACWYWD
Misc
Kulakovskiy et al.(2013)
FOXA3_MOUSE.H11MO.0.A
0.854
0.953
FOXA3
M10557_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF3G_Q4
0.854
0.953
FOXA3
M04833_2.00
Homo sapiens
CVYTAWGTAAACAAWB
VWTTGTTTACWTARBG
SELEX
Yin et al.(2017)
FOXA3_FL_Methyl-HT-SELEX_1
0.854
0.953
FOXA3
M04834_2.00
Homo sapiens
HWRWGYAAATATTKACWYWD
HWRWGTMAATATTTRCWYWD
SELEX
Yin et al.(2017)
FOXA3_FL_Methyl-HT-SELEX_2
0.854
0.953
Foxa2
M00162_2.00
Mus musculus
GTAAAYAW
WTRTTTAC
PBM
Badis et al.(2009)
Foxa2_2830
0.842
0.930
FOXA2
M04815_2.00
Homo sapiens
NHVNRYMAATATTKACNNDN
NHNNGTMAATATTKRYNBDN
SELEX
Yin et al.(2017)
FOXA2_eDBD_HT-SELEX
0.842
0.930
Foxa2
M08121_2.00
Mus musculus
TRTTTACWYWDN
NHWRWGTAAAYA
ChIP-seq
Mathelier et al.(2014)
MA0047.2
0.842
0.930
FOXA2
M07959_2.00
Homo sapiens
NNWRWGYAAAYANNN
NNNTRTTTRCWYWNN
ChIP-seq
Gerstein et al.(2012)
HepG2_FOXA2_HudsonAlpha
0.842
0.930
FOXA2
M09088_2.00
Homo sapiens
NHWRWGTAAACA
TGTTTACWYWDN
Misc
Kulakovskiy et al.(2013)
FOXA2_HUMAN.H11MO.0.A
0.842
0.930
Foxa2
M09104_2.00
Mus musculus
BNHTRTTKACWYW
WRWGTMAAYADNV
Misc
Kulakovskiy et al.(2013)
FOXA2_MOUSE.H11MO.0.A
0.842
0.930
FOXA2
M09542_2.00
Homo sapiens
WVWGTMAACANV
BNTGTTKACWBW
Misc
Heinz et al.(2010)
Liver-Foxa2_GSE25694
0.842
0.930
FOXA2
M10540_2.00
Homo sapiens
WAARYAAAYADKNMV
BKNMHTRTTTRYTTW
Transfac
Matys et al.(2006)
V$HNF3B_01
0.842
0.930
FOXA2
M10541_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF3B_Q6
0.842
0.930
AAA20679
M10575_2.00
Xenopus laevis
WNWGTMAACAWWMW
WKWWTGTTKACWNW
Transfac
Matys et al.(2006)
V$XFD3_01
0.842
0.930
FOXA2
M04816_2.00
Homo sapiens
NWRNRYMAATATTKACWNWN
NWNWGTMAATATTKRYNYWN
SELEX
Yin et al.(2017)
FOXA2_eDBD_Methyl-HT-SELEX
0.842
0.930
fkh
M03734_2.00
Drosophila melanogaster
WRWGYMAATATTKRCWYW
WRWGYMAATATTKRCWYW
SELEX
Nitta et al.(2015)
fkh_1
0.820
0.884
fkh
M03735_2.00
Drosophila melanogaster
HWASAATAAYAWT
AATRTTATTSTWD
SELEX
Nitta et al.(2015)
fkh_2
0.820
0.884
fkh
M06473_2.00
Drosophila melanogaster
NTRDDYAAACA
TGTTTRHHYAN
B1H
Mathelier et al.(2014)
MA0446.1
0.820
0.884
fkh
M06194_2.00
Drosophila melanogaster
NTRDDYAAACA
TGTTTRHHYAN
B1H
Zhu et al.(2011)
fkh_NAR_FBgn0000659
0.820
0.884
fkh
M08200_2.00
Drosophila melanogaster
NTRDDYAAACA
TGTTTRHHYAN
ChIP-seq
Contrino et al.(2012)
Mf15
0.820
0.884
fkh
M09668_2.00
Drosophila melanogaster
TRTTTRCAHAAG
CTTDTGYAAAYA
Misc
Kulakovskiy et al.(2009)
fkh
0.820
0.884
pha-4
M08123_2.00
Caenorhabditis elegans
WRWGYAAAYA
TRTTTRCWYW
ChIP-seq
Mathelier et al.(2014)
MA0546.1
0.817
0.860
pha-4
M08201_2.00
Caenorhabditis elegans
GTAAACAR
YTGTTTAC
ChIP-seq
Contrino et al.(2012)
Mw164
0.817
0.860
pha-4
M09548_2.00
Caenorhabditis elegans
RYAMAYAN
NTRTKTRY
Misc
Heinz et al.(2010)
cElegans-Embryos-PHA4_modEncode
0.817
0.860
Foxb1
M01983_2.00
Mus musculus
TRTTKAYWYW
WRWRTMAAYA
PBM
Weirauch et al.(2014)
pTH2808
0.694
0.733
FOXB1
M03028_2.00
Homo sapiens
GAATGACACRGCKV
BMGCYGTGTCATTC
SELEX
Jolma et al.(2013)
FOXB1_1
0.694
0.733
FOXB1
M03029_2.00
Homo sapiens
WRWGTMAATATTKACWYW
WRWGTMAATATTKACWYW
SELEX
Jolma et al.(2013)
FOXB1_2
0.694
0.733
FOXB1
M03030_2.00
Homo sapiens
WTRTTKACWTW
WAWGTMAAYAW
SELEX
Jolma et al.(2013)
FOXB1_3
0.694
0.733
FOXB1
M03031_2.00
Homo sapiens
NTRTTTACW
WGTAAAYAN
SELEX
Jolma et al.(2013)
FOXB1_4
0.694
0.733
FOXB1
M04837_2.00
Homo sapiens
NWRDGYMAATATTKRCWYWD
HWRWGYMAATATTKRCHYWN
SELEX
Yin et al.(2017)
FOXB1_eDBD_HT-SELEX
0.694
0.733
FOXB1
M04838_2.00
Homo sapiens
NWRNGYMAATATTKRCDYWD
HWRHGYMAATATTKRCNYWN
SELEX
Yin et al.(2017)
FOXB1_eDBD_Methyl-HT-SELEX
0.694
0.733
fd96Ca
M03743_2.00
Drosophila melanogaster
WRWGYMAATATTKRCWYW
WRWGYMAATATTKRCWYW
SELEX
Nitta et al.(2015)
fd96Ca_1
0.686
0.698
For this family, TFs with SR scores >
0.664
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSP00000250448
Forkhead
170
259
KPPYSYISLITMAIQQAPSKMLTLSEIYQWIMDLFPYYRQNQQRWQNSIRHSLSFNDCFVKVARSPDKPGKGSYWTLHPDSGNMFENGCY
Links
Other
Forkhead
family TFs
Other
Homo sapiens
TFs
502 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy