CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

XP_002939401 *(Xenopus tropicalis)* Forkhead
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00250 (Forkhead)	IPR001766	XP_002939401	T189758_2.00	Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
Foxo6 M00798_2.00	Mus musculus	NNNNHHRYDN	NHRYDDNNNN	PBM Weirauch et al.(2013) pTH3477	0.808	0.952
FOXO6 M03049_2.00	Homo sapiens	GTAAACATGTTTAC	GTAAACATGTTTAC	SELEX Jolma et al.(2013) FOXO6_1	0.808	0.952
FOXO6 M03050_2.00	Homo sapiens	GTAAACA	TGTTTAC	SELEX Jolma et al.(2013) FOXO6_2	0.808	0.952
FOXO6 M03051_2.00	Homo sapiens	TTTCCCCACACGMC	GKCGTGTGGGGAAA	SELEX Jolma et al.(2013) FOXO6_3	0.808	0.952
Foxo3 M00797_2.00	Mus musculus	RTMAACAN	NTGTTKAY	PBM Weirauch et al.(2013) pTH3749	0.804	0.867
FOXO3 M03019_2.00	Homo sapiens	GTAAACATGTTTAC	GTAAACATGTTTAC	SELEX Jolma et al.(2013) FOXO3_1	0.804	0.867
FOXO3 M03020_2.00	Homo sapiens	GTAAACAW	WTGTTTAC	SELEX Jolma et al.(2013) FOXO3_2	0.804	0.867
FOXO3 M03021_2.00	Homo sapiens	KTTCCCCACAC	GTGTGGGGAAM	SELEX Jolma et al.(2013) FOXO3_3	0.804	0.867
FOXO3 M04813_2.00	Homo sapiens	HHCCCCACACN	NGTGTGGGGDD	SELEX Yin et al.(2017) FOXO3_eDBD_HT-SELEX	0.804	0.867
FOXO3 M09087_2.00	Homo sapiens	DGTAAACAVV	BBTGTTTACH	Misc Kulakovskiy et al.(2013) FOXO3_HUMAN.H11MO.0.B	0.804	0.867
Foxo3 M09110_2.00	Mus musculus	DGTAAACAVV	BBTGTTTACH	Misc Kulakovskiy et al.(2013) FOXO3_MOUSE.H11MO.0.B	0.804	0.867
FOXO3 M10537_2.00	Homo sapiens	WAHGTAAACAAVND	HNBTTGTTTACDWW	Transfac Matys et al.(2006) V$FOXO3_01	0.804	0.867
FOXO3 M10538_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$FOXO3A_Q1	0.804	0.867
FOXO3 M10539_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$FOXO3A_Q3	0.804	0.867
FOXO3 M04814_2.00	Homo sapiens	NHCCCCACACV	BGTGTGGGGDN	SELEX Yin et al.(2017) FOXO3_eDBD_Methyl-HT-SELEX	0.804	0.867
Foxo1 M00795_2.00	Mus musculus	NRWMAACAN	NTGTTKWYN	PBM Weirauch et al.(2013) pTH3846	0.798	0.904
FOXO1 M03022_2.00	Homo sapiens	RTAAACAW	WTGTTTAY	SELEX Jolma et al.(2013) FOXO1_1	0.798	0.904
FOXO1 M03023_2.00	Homo sapiens	GTAAACATGTTTAY	RTAAACATGTTTAC	SELEX Jolma et al.(2013) FOXO1_2	0.798	0.904
FOXO1 M03024_2.00	Homo sapiens	TTTCCCCACACD	HGTGTGGGGAAA	SELEX Jolma et al.(2013) FOXO1_3	0.798	0.904
Foxo1 M08122_2.00	Mus musculus	DGTAAACARSH	DSYTGTTTACH	ChIP-seq Mathelier et al.(2014) MA0480.1	0.798	0.904
FOXO1 M09091_2.00	Homo sapiens	NRDAAACAVVVN	NBBBTGTTTHYN	Misc Kulakovskiy et al.(2013) FOXO1_HUMAN.H11MO.0.A	0.798	0.904
Foxo1 M09108_2.00	Mus musculus	RWMAACAVVN	NBBTGTTKWY	Misc Kulakovskiy et al.(2013) FOXO1_MOUSE.H11MO.0.A	0.798	0.904
Foxo1 M09547_2.00	Mus musculus	GTAAACAV	BTGTTTAC	Misc Heinz et al.(2010) RAW-Foxo1_Fan_et_al.	0.798	0.904
FOXO1 M10549_2.00	Homo sapiens	NVWAAACAMN	NKTGTTTWBN	Transfac Matys et al.(2006) V$FOXO1_01	0.798	0.904
FOXO1 M10550_2.00	Homo sapiens	VNHGTAAACAANHH	DDNTTGTTTACDNB	Transfac Matys et al.(2006) V$FOXO1_02	0.798	0.904
FOXO1 M10551_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$FOXO1_03	0.798	0.904
FOXO1 M10552_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$FOXO1_04	0.798	0.904
FOXO1 M10553_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$FOXO1A_Q3	0.798	0.904
FOXO1 M10554_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$FOXO1A_Q5	0.798	0.904
Foxo4 M00794_2.00	Mus musculus	NNRWMAAYAN	NTRTTKWYNN	PBM Weirauch et al.(2013) pTH3731	0.789	0.807
Foxo4 M09107_2.00	Mus musculus	MVWAAACAA	TTGTTTWBK	Misc Kulakovskiy et al.(2013) FOXO4_MOUSE.H11MO.0.C	0.789	0.807
daf-16 M01989_2.00	Caenorhabditis elegans	NNRWMAAYAN	NTRTTKWYNN	PBM Weirauch et al.(2014) pTH8995	0.780	0.699
foxo M06198_2.00	Drosophila melanogaster	YVRWAAACA	TGTTTWYBR	B1H Zhu et al.(2011) foxo_SANGER_10_FBgn0038197	0.755	0.795
FOXO4 M03039_2.00	Homo sapiens	GTMAACATGTTKAC	GTMAACATGTTKAC	SELEX Jolma et al.(2013) FOXO4_1	0.677	0.771
FOXO4 M03040_2.00	Homo sapiens	GTAAACA	TGTTTAC	SELEX Jolma et al.(2013) FOXO4_2	0.677	0.771
FOXO4 M03041_2.00	Homo sapiens	WTTCCCCACACR	YGTGTGGGGAAW	SELEX Jolma et al.(2013) FOXO4_3	0.677	0.771
FOXO4 M04849_2.00	Homo sapiens	VBGYMMACAN	NTGTKKRCVB	SELEX Yin et al.(2017) FOXO4_eDBD_HT-SELEX	0.677	0.771
FOXO4 M09097_2.00	Homo sapiens	MVWAAACAA	TTGTTTWBK	Misc Kulakovskiy et al.(2013) FOXO4_HUMAN.H11MO.0.C	0.677	0.771
FOXO4 M10562_2.00	Homo sapiens	VWAAACAHNHH	DDNDTGTTTWB	Transfac Matys et al.(2006) V$FOXO4_01	0.677	0.771
FOXO4 M10563_2.00	Homo sapiens	NWNGTAAACAAMNN	NNKTTGTTTACNWN	Transfac Matys et al.(2006) V$FOXO4_02	0.677	0.771
FOXO4 M04850_2.00	Homo sapiens	NNGTMMACAN	NTGTKKACNN	SELEX Yin et al.(2017) FOXO4_eDBD_Methyl-HT-SELEX	0.677	0.771
FOXP1 M00836_2.00	Homo sapiens	NRTMAACANN	NNTGTTKAYN	PBM Gabut et al.(2011) pEX0123	0.664	0.422
FOXP1 M00837_2.00	Homo sapiens	DGTAAACAA	TTGTTTACH	PBM Gabut et al.(2011) pEX0124	0.664	0.422
FOXP1 M01976_2.00	Homo sapiens	RTAAACAA	TTGTTTAY	PBM Weirauch et al.(2014) pTH5656	0.664	0.422
Foxp1 M00793_2.00	Mus musculus	NRTMAAYAN	NTRTTKAYN	PBM Weirauch et al.(2013) pTH3855	0.664	0.422
FOXP1 M04811_2.00	Homo sapiens	NTGTTTRYNRTNNNNNNBNAYRVWMAACAN	NTGTTKWBYRTNVNNNNNNAYNRYAAACAN	SELEX Yin et al.(2017) FOXP1_eDBD_HT-SELEX	0.664	0.422
FOXP1 M08115_2.00	Homo sapiens	NDGTAAACAVNN	NNBTGTTTACHN	ChIP-seq Mathelier et al.(2014) MA0481.2	0.664	0.422
FOXP1 M09086_2.00	Homo sapiens	RKAAACAVM	KBTGTTTMY	Misc Kulakovskiy et al.(2013) FOXP1_HUMAN.H11MO.0.A	0.664	0.422
FOXP1 M09541_2.00	Homo sapiens	NDGTAAACAVNN	NNBTGTTTACHN	Misc Heinz et al.(2010) H9-FOXP1_GSE31006	0.664	0.422
FOXP1 M10536_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$FOXP1_01	0.664	0.422
FOXP1 M04812_2.00	Homo sapiens	NTGTTTRYBRTNNNNNNBNAYRVWMAACAH	DTGTTKWBYRTNVNNNNNNAYVRYAAACAN	SELEX Yin et al.(2017) FOXP1_eDBD_Methyl-HT-SELEX	0.664	0.422
For this family, TFs with SR scores > 0.664* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
XP_002939401	Forkhead	56	145	GNLSYADLITKAIESSPERRLTLSQIYDWMVRFVPYFKDKGDSNSSAGWKNSIRHNLSLHTRFIRVQNEGTGKSSWWMLNPEGGKTGKTP

Links
Other Forkhead family TFs
Other *Xenopus tropicalis* TFs

320 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
SapurV1A.0523s0090	Salix purpurea	SapurV1A.0523s0090	N
SapurV1A.0523s0270	Salix purpurea	SapurV1A.0523s0270	N
SapurV1A.0618s0180	Salix purpurea	SapurV1A.0618s0180	N
SapurV1A.1383s0100	Salix purpurea	SapurV1A.1383s0100	N

XP_002939401 (Xenopus tropicalis) Forkhead

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

320 Related TFs

XP_002939401 **(Xenopus tropicalis)
Forkhead**