CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Bo1g122970 *(Brassica oleracea)* GATA
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00320 (GATA)	IPR000679	Bo1g122970	T191876_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
GATA16 M06897_2.00	Arabidopsis thaliana	ATGATGATGATSATGATGATGATSATG	CATSATCATCATCATSATCATCATCAT	Dap-seq OMalley et al.(2016) GATA16_col_a	0.823	0.806
GATA15 M01997_2.00	Arabidopsis thaliana	NNHGATCNN	NNGATCDNN	PBM Weirauch et al.(2014) pTH7662	0.803	0.806
GATA15 M06886_2.00	Arabidopsis thaliana	GATGATGATGATGATGATS	SATCATCATCATCATCATC	Dap-seq OMalley et al.(2016) GATA15_col_b	0.803	0.806
For this family, TFs with SR scores > 0.802* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Bo1g122970.1	GATA	40	75	CVDCGTFKTPLWRGGPAGPKSLCNACGIKSRKKRQA

Links
Other GATA family TFs
Other *Brassica oleracea* TFs

112 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
ARB_00053	Arthroderma benhamiae	ARB_00053	N	0.000
BDDG_02924	Blastomyces dermatitidis	BDDG_02924	N	0.000
ACLA_019810	Aspergillus clavatus	CADACLAG00002757	N	0.000
AFUA_1G15550	Aspergillus fumigatus	CADAFUAG00007181	N	0.000
ATEG_05248	Aspergillus terreus	CADATEAG00005614	N	0.000
NFIA_009770	Neosartorya fischeri	CADNFIAG00001068	N	0.000
CIMG_03328	Coccidioides immitis	CIMG_03328	N	0.000
CPC735_008720	Coccidioides posadasii	CPC735_008720	N	0.000
EURHEDRAFT_527983	Aspergillus ruber	EURHEDRAFT_527983	N	0.000
H101_04134	Trichophyton interdigitale	H101_04134	N	0.000
H102_00996	Trichophyton rubrum	H102_00996	N	0.000
HMPREF1541_10658	Cyphellophora europaea	HMPREF1541_10658	N	0.000
MCYG_00398	Microsporum canis	MCYG_00398	N	0.000
MCYG_00398	Arthroderma otae	MCYG_00398	N	0.000
MGYG_01561	Microsporum gypseum	MGYG_01561	N	0.000
PABG_11528	Paracoccidioides brasiliensis	PABG_11528	N	0.000
Pc06g01320	Penicillium chrysogenum	Pc06g01320	N	0.000
PCH_Pc06g01320	Penicillium rubens	PCH_Pc06g01320	N	0.000
PMAA_074540	Talaromyces marneffei	PMAA_074540	N	0.000
PMAA_074540	Penicillium marneffei	PMAA_074540	N	0.000
PVAR5_7465	Byssochlamys spectabilis	PVAR5_7465	N	0.000
TEQG_03626	Trichophyton equinum	TEQG_03626	N	0.000
TRV_00965	Trichophyton verrucosum	TRV_00965	N	0.000
TSTA_095060	Talaromyces stipitatus	TSTA_095060	N	0.000
UREG_07158	Uncinocarpus reesii	UREG_07158	N	0.000