GATA17 (Arabidopsis lyrata)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00320 (GATA) IPR000679 fgenesh2_kg.3__1856__AT3G16870.1 T193287_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA16
M06897_2.00 		Arabidopsis thaliana
ATGATGATGATSATGATGATGATSATG
CATSATCATCATCATSATCATCATCAT		 Dap-seq
OMalley et al.(2016)
GATA16_col_a 		0.823 0.778
GATA15
M01997_2.00 		Arabidopsis thaliana
NNHGATCNN
NNGATCDNN		 PBM
Weirauch et al.(2014)
pTH7662 		0.803 0.778
GATA15
M06886_2.00 		Arabidopsis thaliana
GATGATGATGATGATGATS
SATCATCATCATCATCATC		 Dap-seq
OMalley et al.(2016)
GATA15_col_b 		0.803 0.778
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.3__1856__AT3G16870.1 GATA 43 78

Links

Other GATA family TFs
Other Arabidopsis lyrata TFs

112 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA006277 Oryza indica BGIOSGA006277 N 0.000
BGIOSGA022378 Oryza indica BGIOSGA022378 N 0.000
BGIOSGA037035 Oryza indica BGIOSGA037035 N 0.000
BRADI1G48350 Brachypodium distachyon BRADI1G48350 N 0.000
BRADI3G45470 Brachypodium distachyon BRADI3G45470 N 0.000
BRADI4G41960 Brachypodium distachyon BRADI4G41960 N 0.000
GRMZM2G034868 Zea mays GRMZM2G034868 N 0.000
GRMZM2G043250 Zea mays GRMZM2G043250 N 0.000
GRMZM2G048987 Zea mays GRMZM2G048987 N 0.000
MLOC_13034 Hordeum vulgare MLOC_13034 N 0.000
MLOC_62808 Hordeum vulgare MLOC_62808 N 0.000
OB02G27690 Oryza brachyantha OB02G27690 N 0.000
OB06G14070 Oryza brachyantha OB06G14070 N 0.000
OB12G13670 Oryza brachyantha OB12G13670 N 0.000
OLONG_000187 Oryza longistaminata OLONG_000187 N 0.000
OLONG_014957 Oryza longistaminata OLONG_014957 N 0.000
ONIVA02G22250 Oryza nivara ONIVA02G22250 N 0.000
ONIVA06G05610 Oryza nivara ONIVA06G05610 N 0.000
ORGLA02G0172700 Oryza glaberrima ORGLA02G0172700 N 0.000
ORGLA06G0040800 Oryza glaberrima ORGLA06G0040800 N 0.000
ORGLA12G0035900 Oryza glaberrima ORGLA12G0035900 N 0.000
OS02G0550900 Oryza sativa OS02G0550900 N 0.000
OS06G0166100 Oryza sativa OS06G0166100 N 0.000
OS12G0160900 Oryza sativa OS12G0160900 N 0.000
Pavir.Aa01718 Panicum virgatum Pavir.Aa01718 N 0.000
Pavir.Ba00843 Panicum virgatum Pavir.Ba00843 N 0.000
Pavir.Bb02863 Panicum virgatum Pavir.Bb02863 N 0.000
Pavir.Ca00202 Panicum virgatum Pavir.Ca00202 N 0.000
Pavir.Cb02030 Panicum virgatum Pavir.Cb02030 N 0.000
PDK_20s1320921g004 Phoenix dactylifera PDK_20s1320921g004 N 0.000
Sb02g034560 Sorghum bicolor Sb02g034560 N 0.000
Sb04g022400 Sorghum bicolor Sb04g022400 N 0.000
Sb08g003780 Sorghum bicolor Sb08g003780 N 0.000
Si009370m.g Setaria italica Si009370m.g N 0.000
Si016477m.g Setaria italica Si016477m.g N 0.000
Si029002m.g Setaria italica Si029002m.g N 0.000
Traes_5AS_385093B54 Triticum aestivum Traes_5AS_385093B54 N 0.000
Traes_5BS_BCC406654 Triticum aestivum Traes_5BS_BCC406654 N 0.000
Traes_5DS_620A46565 Triticum aestivum Traes_5DS_620A46565 N 0.000
Traes_7BS_1B525AFF5 Triticum aestivum Traes_7BS_1B525AFF5 N 0.000
Traes_7DS_559DD9894 Triticum aestivum Traes_7DS_559DD9894 N 0.000
TRIUR3_03719 Triticum urartu TRIUR3_03719 N 0.000
TRIUR3_25143 Triticum urartu TRIUR3_25143 N 0.000