GATA13 (Arabidopsis lyrata)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00320 (GATA) IPR000679 scaffold_401176.1 T195126_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA11
M01995_2.00 		Arabidopsis thaliana
CAGATCTH
DAGATCTG		 PBM
Weirauch et al.(2014)
pTH7486 		0.867 0.972
GATA11
M06882_2.00 		Arabidopsis thaliana
HYYAGATCYRRWWHH
DDWWYYRGATCTRRD		 Dap-seq
OMalley et al.(2016)
GATA11_col_a 		0.867 0.972
GATA10
M01994_2.00 		Arabidopsis thaliana
CAGATCTA
TAGATCTG		 PBM
Weirauch et al.(2014)
pTH7615 		0.848 0.889
GATA3
M02003_2.00 		Arabidopsis thaliana
NNNNGATBNN
NNVATCNNNN		 PBM
Weirauch et al.(2014)
pTH7657 		0.837 0.806
GATA7
M02004_2.00 		Arabidopsis thaliana
NNNNATNNNN
NNNNATNNNN		 PBM
Weirauch et al.(2014)
pTH7658 		0.832 0.722
GATA8
M02000_2.00 		Arabidopsis thaliana
NNGATYYVN
NBRRATCNN		 PBM
Weirauch et al.(2014)
pTH7665 		0.823 0.778
GATA9
M02002_2.00 		Arabidopsis thaliana
NHAGATCTDNN
NNHAGATCTDN		 PBM
Weirauch et al.(2014)
pTH7378 		0.823 0.778
GATA12
M00863_2.00 		Arabidopsis thaliana
NNNGATBN
NVATCNNN		 PBM
Franco-Zorrilla et al.(2014)
GATA12 		0.823 0.778
GATA12
M06895_2.00 		Arabidopsis thaliana
DWWYYAGATCYRR
YYRGATCTRRWWH		 Dap-seq
OMalley et al.(2016)
GATA12_col_a 		0.823 0.778
GATA12
M06896_2.00 		Arabidopsis thaliana
YRGATCTRRWYYNDN
NHNRRWYYAGATCYR		 Dap-seq
OMalley et al.(2016)
GATA12_colamp_a 		0.823 0.778
Q76DY3_TOBAC
M10600_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGP1_01 		0.823 0.778
GATA4
M00727_2.00 		Arabidopsis thaliana
NNNGATCNNN
NNNGATCNNN		 PBM
Chang et al.(2013)
pTH7196 		0.819 0.778
GATA4
M06891_2.00 		Arabidopsis thaliana
HNNYRGATCYRRWYY
RRWYYRGATCYRNND		 Dap-seq
OMalley et al.(2016)
GATA4_col_a 		0.819 0.778
GATA1
M01998_2.00 		Arabidopsis thaliana
NNNVATBNNN
NNNVATBNNN		 PBM
Weirauch et al.(2014)
pTH8144 		0.819 0.750
GATA1
M06887_2.00 		Arabidopsis thaliana
RYGRTGRTGRTGRTG
CAYCAYCAYCAYCRY		 Dap-seq
OMalley et al.(2016)
GATA1_col_a 		0.819 0.750
GATA1
M06888_2.00 		Arabidopsis thaliana
HNYAGATCYRRWYB
VRWYYRGATCTRND		 Dap-seq
OMalley et al.(2016)
GATA1_colamp_a 		0.819 0.750
GATA6
M01999_2.00 		Arabidopsis thaliana
NVRATVNDNN
NNHNBATYBN		 PBM
Weirauch et al.(2014)
pTH7317 		0.819 0.694
GATA6
M06890_2.00 		Arabidopsis thaliana
YAGATCTARAWNH
DNWTYTAGATCTR		 Dap-seq
OMalley et al.(2016)
GATA6_col200_a 		0.819 0.694
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
scaffold_401176.1 GATA 214 249

Links

Other GATA family TFs
Other Arabidopsis lyrata TFs

603 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
A1O1_08282 Capronia coronata A1O1_08282 N
A1O3_03291 Capronia epimyces A1O3_03291 I
A1O5_00025 Cladophialophora psammophila A1O5_00025 N
A1O7_03671 Cladophialophora yegresii A1O7_03671 N
A1O9_03542 Exophiala aquamarina A1O9_03542 I
A1O9_13001 Exophiala aquamarina A1O9_13001 I
AOL_s00083g362 Arthrobotrys oligospora AOL_s00083g362 N
BBA_08191 Beauveria bassiana BBA_08191 I
Bcin09g02560 Botrytis cinerea Bcin09g02560 I
BDDG_04796 Blastomyces dermatitidis BDDG_04796 I
BGHDH14_bgh01821 Blumeria graminis BGHDH14_bgh01821 I
ACLA_079920 Aspergillus clavatus CADACLAG00007683 I
AFUA_2G08040 Aspergillus fumigatus CADAFUAG00004446 I
ANIA_05849 Aspergillus nidulans CADANIAG00007192 I
CADAORAG00005589 Aspergillus oryzae CADAORAG00005589 I
NFIA_024310 Neosartorya fischeri CADNFIAG00002261 I
NFIA_083690 Neosartorya fischeri CADNFIAG00006940 I
CCM_00913 Cordyceps militaris CCM_00913 I
CFIO01_02322 Colletotrichum fioriniae CFIO01_02322 I
CGGC5_10205 Colletotrichum gloeosporioides CGGC5_10205 I
CH063_07213 Colletotrichum higginsianum CH063_07213 I
CHGG_00505 Chaetomium globosum CHGG_00505 I
CIMG_00917 Coccidioides immitis CIMG_00917 N
CMQ_2744 Grosmannia clavigera CMQ_2744 I
Cob_02185 Colletotrichum orbiculare Cob_02185 I
CPC735_054240 Coccidioides posadasii CPC735_054240 N
CSUB01_08337 Colletotrichum sublineola CSUB01_08337 I
CTHT_0050850 Chaetomium thermophilum CTHT_0050850 I
DRE_04286 Drechslerella stenobrocha DRE_04286 I
estExt_fgenesh1_pg.C_70327 Cryphonectria parasitica estExt_fgenesh1_pg.C_70327 I
estExt_fgenesh3_pm.C_140174 Neurospora discreta estExt_fgenesh3_pm.C_140174 I
EURHEDRAFT_513914 Aspergillus ruber EURHEDRAFT_513914 I
e_gw1.5.1042.1 Nectria haematococca e_gw1.5.1042.1 I
F503_05733 Ophiostoma piceae uamh F503_05733 I
FFUJ_07449 Fusarium fujikuroi FFUJ_07449 I
FGRRES_17309 Fusarium graminearum FGRRES_17309 I
FOXG_05408 Fusarium oxysporum FOXG_05408 I
FOXG_14277 Fusarium oxysporum FOXG_14277 I
FPSE_00499 Fusarium pseudograminearum FPSE_00499 I
FVEG_02723 Fusarium verticillioides FVEG_02723 I
G647_04707 Cladophialophora carrionii G647_04707 N
GLRG_07449 Colletotrichum graminicola GLRG_07449 I
GSTUM_00005598001 Tuber melanosporum GSTUM_00005598001 I
H072_8333 Dactylellina haptotyla H072_8333 I
H101_07435 Trichophyton interdigitale H101_07435 I
HCBG_04625 Histoplasma capsulatum HCBG_04625 I
HMPREF1120_05352 Exophiala dermatitidis HMPREF1120_05352 N
HMPREF1624_07464 Sporothrix schenckii HMPREF1624_07464 I
M438DRAFT_351239 Aureobasidium pullulans M438DRAFT_351239 N
MBM_05016 Marssonina brunnea MBM_05016 I
MCYG_00297 Microsporum canis MCYG_00297 I
MCYG_00297 Arthroderma otae MCYG_00297 I
MGG_09263 Magnaporthe oryzae MGG_09263 I
MGYG_00861 Microsporum gypseum MGYG_00861 I
NCU04663 Neurospora crassa NCU04663 D
NechaG40581 Fusarium solani NechaG40581 I
OIDMADRAFT_112327 Oidiodendron maius OIDMADRAFT_112327 I
PAAG_08490 Paracoccidioides sp lutzii PAAG_08490 I
PABG_04642 Paracoccidioides brasiliensis PABG_04642 I
PDE_04102 Penicillium oxalicum PDE_04102 I
PDIP_85460 Penicillium digitatum PDIP_85460 I
PEX1_083360 Penicillium expansum PEX1_083360 I
PFICI_07122 Pestalotiopsis fici PFICI_07122 I
PITC_041810 Penicillium italicum PITC_041810 I
PMAA_070340 Penicillium marneffei PMAA_070340 I
PMAA_070340 Talaromyces marneffei PMAA_070340 I
PV04_03866 Capronia semiimmersa PV04_03866 N
PV06_00266 Exophiala oligosperma PV06_00266 N
PV07_06437 Cladophialophora immunda PV07_06437 I
PV08_04106 Exophiala spinifera PV08_04106 N
PV10_05308 Exophiala mesophila PV10_05308 N
PV11_00815 Exophiala sideris PV11_00815 N
PVAR5_8925 Byssochlamys spectabilis PVAR5_8925 I
SBOR_3621 Sclerotinia borealis SBOR_3621 I
SMAC_08342 Sordaria macrospora SMAC_08342 I
SPBR_06325 Sporothrix brasiliensis SPBR_06325 I
SS1G_05371 Sclerotinia sclerotiorum SS1G_05371 I
TEQG_02692 Trichophyton equinum TEQG_02692 I
TESG_02247 Trichophyton tonsurans TESG_02247 I
THITE_40970 Thielavia terrestris THITE_40970 I
TSTA_090670 Talaromyces stipitatus TSTA_090670 I
U727_0043004001 Penicillium solitum U727_0043004001 I
UREG_00865 Uncinocarpus reesii UREG_00865 N
VDAG_00161 Verticillium dahliae VDAG_00161 I
VDBG_00550 Verticillium alfalfae VDBG_00550 I
VDBG_00550 Verticillium albo atrum VDBG_00550 I
Z517_10110 Fonsecaea pedrosoi Z517_10110 N
Z519_00024 Cladophialophora bantiana Z519_00024 N