cassava43030.valid.m1 (Manihot esculenta)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00320 (GATA) IPR000679 cassava43030.valid.m1 T196037_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA16
M06897_2.00 		Arabidopsis thaliana
ATGATGATGATSATGATGATGATSATG
CATSATCATCATCATSATCATCATCAT		 Dap-seq
OMalley et al.(2016)
GATA16_col_a 		0.842 0.917
GATA15
M01997_2.00 		Arabidopsis thaliana
NNHGATCNN
NNGATCDNN		 PBM
Weirauch et al.(2014)
pTH7662 		0.822 0.917
GATA15
M06886_2.00 		Arabidopsis thaliana
GATGATGATGATGATGATS
SATCATCATCATCATCATC		 Dap-seq
OMalley et al.(2016)
GATA15_col_b 		0.822 0.917
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava43030.valid.m1 GATA 29 64

Links

Other GATA family TFs
Other Manihot esculenta TFs

143 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PaG_06368 Pseudozyma aphidis PaG_06368 N
PAN0_008c3388 Pseudozyma antarctica PAN0_008c3388 N
PGUG_03333 Candida guilliermondii PGUG_03333 N
PGUG_03333 Meyerozyma guilliermondii PGUG_03333 N
PHSY_001956 Pseudozyma hubeiensis PHSY_001956 N
PSEUBRA_SCAF12g01741 Pseudozyma brasiliensis PSEUBRA_SCAF12g01741 N
UM05966 Ustilago maydis UM05966 N