orange1.1g023588m.g (Citrus sinensis)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00320 (GATA) IPR000679 orange1.1g023588m.g T196712_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA8
M02000_2.00 		Arabidopsis thaliana
NNGATYYVN
NBRRATCNN		 PBM
Weirauch et al.(2014)
pTH7665 		0.848 0.861
GATA9
M02002_2.00 		Arabidopsis thaliana
NHAGATCTDNN
NNHAGATCTDN		 PBM
Weirauch et al.(2014)
pTH7378 		0.843 0.806
GATA12
M00863_2.00 		Arabidopsis thaliana
NNNGATBN
NVATCNNN		 PBM
Franco-Zorrilla et al.(2014)
GATA12 		0.843 0.806
GATA12
M06895_2.00 		Arabidopsis thaliana
DWWYYAGATCYRR
YYRGATCTRRWWH		 Dap-seq
OMalley et al.(2016)
GATA12_col_a 		0.843 0.806
GATA12
M06896_2.00 		Arabidopsis thaliana
YRGATCTRRWYYNDN
NHNRRWYYAGATCYR		 Dap-seq
OMalley et al.(2016)
GATA12_colamp_a 		0.843 0.806
Q76DY3_TOBAC
M10600_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGP1_01 		0.843 0.806
GATA6
M01999_2.00 		Arabidopsis thaliana
NVRATVNDNN
NNHNBATYBN		 PBM
Weirauch et al.(2014)
pTH7317 		0.837 0.750
GATA6
M06890_2.00 		Arabidopsis thaliana
YAGATCTARAWNH
DNWTYTAGATCTR		 Dap-seq
OMalley et al.(2016)
GATA6_col200_a 		0.837 0.750
GATA11
M01995_2.00 		Arabidopsis thaliana
CAGATCTH
DAGATCTG		 PBM
Weirauch et al.(2014)
pTH7486 		0.833 0.833
GATA11
M06882_2.00 		Arabidopsis thaliana
HYYAGATCYRRWWHH
DDWWYYRGATCTRRD		 Dap-seq
OMalley et al.(2016)
GATA11_col_a 		0.833 0.833
GATA1
M01998_2.00 		Arabidopsis thaliana
NNNVATBNNN
NNNVATBNNN		 PBM
Weirauch et al.(2014)
pTH8144 		0.832 0.778
GATA4
M00727_2.00 		Arabidopsis thaliana
NNNGATCNNN
NNNGATCNNN		 PBM
Chang et al.(2013)
pTH7196 		0.832 0.778
GATA1
M06887_2.00 		Arabidopsis thaliana
RYGRTGRTGRTGRTG
CAYCAYCAYCAYCRY		 Dap-seq
OMalley et al.(2016)
GATA1_col_a 		0.832 0.778
GATA1
M06888_2.00 		Arabidopsis thaliana
HNYAGATCYRRWYB
VRWYYRGATCTRND		 Dap-seq
OMalley et al.(2016)
GATA1_colamp_a 		0.832 0.778
GATA4
M06891_2.00 		Arabidopsis thaliana
HNNYRGATCYRRWYY
RRWYYRGATCYRNND		 Dap-seq
OMalley et al.(2016)
GATA4_col_a 		0.832 0.778
GATA7
M02004_2.00 		Arabidopsis thaliana
NNNNATNNNN
NNNNATNNNN		 PBM
Weirauch et al.(2014)
pTH7658 		0.823 0.722
GATA10
M01994_2.00 		Arabidopsis thaliana
CAGATCTA
TAGATCTG		 PBM
Weirauch et al.(2014)
pTH7615 		0.819 0.778
GATA3
M02003_2.00 		Arabidopsis thaliana
NNNNGATBNN
NNVATCNNNN		 PBM
Weirauch et al.(2014)
pTH7657 		0.819 0.722
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
orange1.1g023588m GATA 213 248

Links

Other GATA family TFs
Other Citrus sinensis TFs

611 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA004852 Oryza indica BGIOSGA004852 N
BGIOSGA017964 Oryza indica BGIOSGA017964 N
BGIOSGA017965 Oryza indica BGIOSGA017965 N
BRADI2G55797 Brachypodium distachyon BRADI2G55797 N
F775_31610 Aegilops tauschii F775_31610 N
GRMZM2G027914 Zea mays GRMZM2G027914 N
GRMZM2G091201 Zea mays GRMZM2G091201 N
GRMZM2G143640 Zea mays GRMZM2G143640 N
LPERR01G32800 Leersia perrieri LPERR01G32800 N
LPERR05G14380 Leersia perrieri LPERR05G14380 N
MDP0000289018 Malus domestica MDP0000289018 I
OBART01G38220 Oryza barthii OBART01G38220 N
OGLUM01G42400 Oryza glumaepatula OGLUM01G42400 N
OGLUM05G19230 Oryza glumaepatula OGLUM05G19230 N
OGLUM05G19240 Oryza glumaepatula OGLUM05G19240 N
OMERI01G35110 Oryza meridionalis OMERI01G35110 N
ONIVA05G19090 Oryza nivara ONIVA05G19090 N
OPUNC01G36990 Oryza punctata OPUNC01G36990 N
OPUNC05G16000 Oryza punctata OPUNC05G16000 N
ORGLA01G0320500 Oryza glaberrima ORGLA01G0320500 N
ORGLA05G0157700 Oryza glaberrima ORGLA05G0157700 N
ORUFI01G41590 Oryza rufipogon ORUFI01G41590 N
ORUFI05G19330 Oryza rufipogon ORUFI05G19330 N
ORUFI05G19340 Oryza rufipogon ORUFI05G19340 N
OS01G0863300 Oryza sativa OS01G0863300 N
OS05G0442400 Oryza sativa OS05G0442400 N
Pavir.Ea03744 Panicum virgatum Pavir.Ea03744 N
Pavir.J02275 Panicum virgatum Pavir.J02275 N
Pavir.J08778 Panicum virgatum Pavir.J08778 N
Sb03g040730 Sorghum bicolor Sb03g040730 N
Sb09g021770 Sorghum bicolor Sb09g021770 N
Si003047m.g Setaria italica Si003047m.g N
Si023363m.g Setaria italica Si023363m.g N
TRAES3BF019300020CFD_g Triticum aestivum TRAES3BF019300020CFD_g N