CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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RGL2
(
Arabidopsis thaliana
)
GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03514 (GRAS)
IPR005202
AT3G03450
T199829_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
RGL2
M02031_2.00
Arabidopsis thaliana
NGTACGGHN
NDCCGTACN
PBM
Weirauch et al.(2014)
pTH8681
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
For this family, TFs with SR scores >
0.700
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M02031_2.00
GRAS
51
416
LVHALVACAEAIHQENLNLADALVKRVGTLAGSQAGAMGKVATYFAQALARRIYRDYTAETDVCAAVNPSFEEVLEMHFYESCPYLKFAHFTANQAILEAVTTARRVHVIDLGLNQGMQWPALMQALALRPGGPPSFRLTGIGPPQTENSDSLQQLGWKLAQFAQNMGVEFEFKGLAAESLSDLEPEMFETRPESETLVVNLVFELHRLLARSGSIEKLLNTVKAIKPSIVTVVEQEANHNGIVFLDRFNEALHYYSSLFDSLEDSYSLPSQDRVMSEVYLGRQILNVVAAEGSDRVERHETAAQWRIRMKSAGFDPIHLGSSAFKQASMLLSLYATGDGYRVEENDGCLMIGWQTRPLITTSAWK
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AT3G03450.1
GRAS
180
545
LVHALVACAEAIHQENLNLADALVKRVGTLAGSQAGAMGKVATYFAQALARRIYRDYTAETDVCAAVNPSFEEVLEMHFYESCPYLKFAHFTANQAILEAVTTARRVHVIDLGLNQGMQWPALMQALALRPGGPPSFRLTGIGPPQTENSDSLQQLGWKLAQFAQNMGVEFEFKGLAAESLSDLEPEMFETRPESETLVVNLVFELHRLLARSGSIEKLLNTVKAIKPSIVTVVEQEANHNGIVFLDRFNEALHYYSSLFDSLEDSYSLPSQDRVMSEVYLGRQILNVVAAEGSDRVERHETAAQWRIRMKSAGFDPIHLGSSAFKQASMLLSLYATGDGYRVEENDGCLMIGWQTRPLITTSAWK
Links
Other
GRAS
family TFs
Other
Arabidopsis thaliana
TFs
24 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
A1O9_10773
Exophiala aquamarina
A1O9_10773
I
0.000
BBA_08083
Beauveria bassiana
BBA_08083
I
0.000
CCM_01116
Cordyceps militaris
CCM_01116
I
0.000
CFIO01_07294
Colletotrichum fioriniae
CFIO01_07294
N
0.000
CGGC5_8357
Colletotrichum gloeosporioides
CGGC5_8357
I
0.000
CH063_06329
Colletotrichum higginsianum
CH063_06329
I
0.000
Cob_01730
Colletotrichum orbiculare
Cob_01730
N
0.000
CPUR_03208
Claviceps purpurea
CPUR_03208
I
0.000
estExt_fgenesh1_kg.C_40256
Cryphonectria parasitica
estExt_fgenesh1_kg.C_40256
N
0.000
FFUJ_01501
Fusarium fujikuroi
FFUJ_01501
I
0.000
FGRRES_01307
Fusarium graminearum
FGRRES_01307
I
0.000
FOXG_00080
Fusarium oxysporum
FOXG_00080
I
0.000
FPSE_01403
Fusarium pseudograminearum
FPSE_01403
I
0.000
FVEG_01436
Fusarium verticillioides
FVEG_01436
I
0.000
GLRG_03872
Colletotrichum graminicola
GLRG_03872
N
0.000
HMPREF1541_08750
Cyphellophora europaea
HMPREF1541_08750
N
0.000
LEMA_P050050.1
Leptosphaeria maculans
LEMA_P050050.1
I
0.000
MYCTH_2088766
Myceliophthora thermophila
MYCTH_2088766
N
0.000
OCS_06442
Ophiocordyceps sinensis
OCS_06442
I
0.000
PV06_10058
Exophiala oligosperma
PV06_10058
I
0.000
PV10_08565
Exophiala mesophila
PV10_08565
N
0.000
SNOG_15057
Phaeosphaeria nodorum
SNOG_15057
I
0.000
SNOG_15057
Stagonospora nodorum
SNOG_15057
I
0.000
THITE_2113068
Thielavia terrestris
THITE_2113068
I
0.000
TRIATDRAFT_148632
Trichoderma atroviride
TRIATDRAFT_148632
I
0.000
TRIREDRAFT_58130
Trichoderma reesei
TRIREDRAFT_58130
I
0.000
TRIVIDRAFT_173998
Trichoderma virens
TRIVIDRAFT_173998
I
0.000
UCREL1_1818
Eutypa lata
UCREL1_1818
I
0.000
UCRPA7_7634
Togninia minima
UCRPA7_7634
N
0.000
VDAG_08823
Verticillium dahliae
VDAG_08823
N
0.000
VDBG_05122
Verticillium alfalfae
VDBG_05122
N
0.000
VDBG_05122
Verticillium albo atrum
VDBG_05122
N
0.000
VHEMI02386
Torrubiella hemipterigena
VHEMI02386
I
0.000
W97_00703
Coniosporium apollinis
W97_00703
I
0.000